BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891079
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G32460.1 | Symbols: | Transcriptional factor B3 family prot... 863 0.0
> AT5G32460.1 | Symbols: | Transcriptional factor B3 family protein
| chr5:12081803-12084148 REVERSE LENGTH=1593
Length=1593
Score = 863 bits (467), Expect = 0.0
Identities = 555/597 (93%), Gaps = 8/597 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATTCAATGTTCTCTTCTTCGGCCAAGCCACACTTCTTGAAGCCTATTCTTCCA 60
||| || || |||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1 ATGACTGATGCAATGTTCTCTTCTTCGGCCAAGCCACACTTCATCAAGCCTATGCTTCCA 60
Query 61 GGCTTCAAAACCTATATT-TTGATTCCTAAAGCTTTTTATTCGAAATACTTAGAGGGAAG 119
|||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 GGCTTCGAAACCTATATTGTT-ATTCCTAAAGCTTTTTACTCGAACTACTTAGAGGGAAG 119
Query 120 ACAAGAGGGAAACGCTGCAGAACTTAGATCAGACGCGTCGGAGATCACCTGGAATATTAA 179
|||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || ||
Sbjct 120 ACAAGAGGGAAACGCTGCAGAACTGAGATCAGACGCCACGGAGATCACTTGGAAAATAAA 179
Query 180 GATAGACGGCCGAAGAATGACCAAAGGATGGGAAGAATTTGCGGTGGGTCACAATCTTCA 239
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 180 GATAGACGGCCGAAGAATGACCAAAGGGTGGGAAGAATTTGCGGTGGCTCACAATCTTCA 239
Query 240 GGTCGGCGACATTCTTGTTTTCAGACACGAAGGGAATCTCTTGTTTCATGTCACACCTTT 299
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGTCGACGACATTCTTGTTTTCAGACACGAAGGAAATCTCTTGTTTCATGTCACACCTTT 299
Query 300 TGGACTGAGTTGCTGTGAGATACTTTACTCACAGA-ATGACGAGAAAGTTGTCAAAGACA 358
||||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 300 TGGACTGAGTTTTTGTGAGATACTTTACTCACAGAGA-GACGAGAAAGATGTCAAAGACA 358
Query 359 AGACGGGAAAGGTTACACGATATAAAACGGTGAAG-AAAACGGCAAAAAATGAGTGTTCA 417
|||||||||||||||| ||| || |||||||||| ||||||| ||||||||||||||||
Sbjct 359 CGACGGGAAAGGTTACAAGATCTAGAACGGTGAAGAAAAACGG-AAAAAATGAGTGTTCA 417
Query 418 TCAGTGGACACTGATTTTGTGGTCCCTGTCACCGCCTCAAACCAACGACTTGATTCATTT 477
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 418 TCAGTGGACACTGATTTTGTGGTCCCTGTTACAGCCTCAAACCAACGAGTTGATTCATTT 477
Query 478 TATCTTCCAAGAGGTTTTACCACCTCAAGTGGTTTGAGTAAACTGTGCAATGAGATAATT 537
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 478 TATCTTCCAAGAGGTTTTACCACATCAAGTGGTTCGAGTAAACTGTGCAATGAGATAATT 537
Query 538 CTAATGGATGAAAAA-AGCAGGCCATCGACGCTAAAACTGTGTTACCATAAATCAAG 593
||||| ||||||||| | |||||||||||||||||||||| ||||| ||||||||||
Sbjct 538 CTAATAGATGAAAAAGA-CAGGCCATCGACGCTAAAACTGCGTTACAATAAATCAAG 593
Score = 327 bits (177), Expect = 8e-89
Identities = 225/247 (91%), Gaps = 7/247 (3%)
Strand=Plus/Plus
Query 593 GAAAACCACCCGTGCTCCGGATTTATCCTTTGGAGAGAGATGAGGACAACATTGGAAACC 652
||||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||| |
Sbjct 689 GAAAAACACCCGTGCTCCGGATTTTTCCTTTGGAGAGGGATGAGGACAACATTGAAAAAC 748
Query 653 ACTCGAAGAAGATTAAGCAAGAAGTAGAACATGA-GA--CTGTGAAAGAAGAGACGAATG 709
|||| |||||| |||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 749 ACTCAAAGAAGGTTAAGCAAGAAGTAGAGCATGAGGAGTCTGTGAAAGAAGAGACGAATG 808
Query 710 TGGAATCAGGAAAGCTTAAAAGAGATGGATTACTGAAGAAAGATCCACAAAAAGT-GTGT 768
|||||||||||||||||||||||||| |||||||| |||||||||| |||||| | ||||
Sbjct 809 TGGAATCAGGAAAGCTTAAAAGAGATAGATTACTGCAGAAAGATCC-CAAAAATTTGTGT 867
Query 769 TCTTCATCACACGACAC-AATCTTTGTGGTCCCTGGCACAGCTTCAAACCAACGAAATGA 827
||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 868 TCTACATCACAAGACACTAAT-TTTGTGGTCCCTGTCACAGCTTCAAACCAACGACATGA 926
Query 828 TTCATTT 834
|||||||
Sbjct 927 TTCATTT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5