BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891089
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33350.1 | Symbols: | pseudogene, similar to P0406H10.5, nu... 1688 0.0
AT5G33340.1 | Symbols: CDR1 | Eukaryotic aspartyl protease fami... 1136 0.0
> AT5G33350.1 | Symbols: | pseudogene, similar to P0406H10.5,
nucleoid DNA-binding protein cnd41, chloroplast - Nicotiana
tabacum, PIR:T01996; blastp match of 37% identity and 1.5e-57
P-value to GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5
{Oryza sativa (japonica cultivar-group)} | chr5:12596785-12598098
FORWARD LENGTH=1314
Length=1314
Score = 1688 bits (914), Expect = 0.0
Identities = 1188/1319 (90%), Gaps = 24/1319 (2%)
Strand=Plus/Plus
Query 6 ctctctattcacttcagttctcttgtctctatgtttattctcttcacatattctctcaAA 65
|||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||
Sbjct 3 CTCTCTATTCACTTCACTTCTCTTGTCTCTATGTTTATTCTCTTCTCCTATTTTCTCAAA 62
Query 66 CGTAAACGCCAAACCAAAACTAGGCTTCACCACCGATCTGATCCACCGTGATTCTCCTAA 125
|| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 63 CGCAAACGCCAAACCAAAACTAGGCTTCACCGCGGATCTGATCCACCGCGATTCTCCTAA 122
Query 126 ATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAGCGTATAAGAAACGCTATCCACCG 185
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 123 ATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAACGTATGAGAAACGCTATCCACCG 182
Query 186 ATCATTTAACCGTGTTTCCCATTTCACTGATCTCTCTGAAATGGATGCATCACTTAACTC 245
||| |||||||||| ||||||||||| | |||| | ||||| |||||||||||||||| |
Sbjct 183 ATCCTTTAACCGTGCTTCCCATTTCAGTAATCTTTTTGAAAAGGATGCATCACTTAACGC 242
Query 246 ACCACAAACTGATATCACCCCATGTGGCGGTGA-ATATCTCATGAACCTATCCCTT-GGA 303
||||||||||||||||||| || | |||| | |||||| |||||| |||||||| |||
Sbjct 243 ACCACAAACTGATATCACCAAATATTTCGGT-ATATATCTTATGAACGTATCCCTTGGGA 301
Query 304 ------ACACCT-CCTTCCCCGATCATGGCGGTCGCTGACACTGGAAGTAATCTCATCTG 356
|||||| || | ||| |||||||||| ||||||||| |||||| ||||||||||
Sbjct 302 GTTGGGACACCTCCCGT-CCCAATCATGGCGGCCGCTGACACCGGAAGTGATCTCATCTG 360
Query 357 GACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAA 416
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACGCAGTGCAAACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAA 420
Query 417 AGCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAA- 475
||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||
Sbjct 421 AGCGTCTTCCACATACAAAGACGTTTCTTGCCCCTCAAGCCAATGTAGGGCTCTA-AAAG 479
Query 476 ATCAAGCCTCTTGTTCCACAGAAGATAAAACTTGCTCTTAC-CTTGTGTCTTACGCGGAT 534
|| | || |||||||||| | |||| || |||||||||||| | || ||||| ||||
Sbjct 480 ATGATGCTTCTTGTTCCAAAAAAGACAACACTTGCTCTTACTCAA-TGAATTACGGGGAT 538
Query 535 GGCTCATACACAATGGGTAA-GTTCGCTGTGGATACCTTAACACTCGGCTCCACCGATAA 593
||||||| || |||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 539 AACTCATACTCACGGGGTAATGT-CGCTGTGGATACCTTAACGCTCGGCTCCACCGATAA 597
Query 594 CCGCCCGGTGCAGCTTAAGAATATTATCATCGGTTGTGGTCA-GAACAACGCTGTAACAT 652
||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 598 CCGTCCGGTGCAGGTTAAGAATATTATCATCGGTTGTGGTCACGAA-AACGCTGTAACAT 656
Query 653 TTAGAAACAAGAGCTCTGGAGTCGTTGGACTTGGTGGTGGTGCAGTTTCGCTCATTAAGC 712
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
Sbjct 657 TTAGAAACAAGAGCTCTGGAATCGTTGGACTTGGTGGTGGTGCGGTTTCGCTCGTTAAAC 716
Query 713 AACTCGGAGACTCCATCGACGGTAAATTCTCATACTGCTTGGTACCTGAAAATGATCAAA 772
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AACTCGGAGACTCCATCGAAGGTAAATTCTCATACTGCTTGGTACCTGAAAATGATCAAA 776
Query 773 CGAGCAAGATCAACTTCGGAACTAATGCCGTTGTGTCGGGACCGGGAACTGTCTCAACTC 832
|||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 777 CGAGCAAGATTAGTTTCGGAACCAATGCGGTTGTGTCGGGACCGGGAACTGTCTCAACTC 836
Query 833 CCTTGGTCGTGAAGTCTCGAGATACCTTCTATTATCTAACCCTAAAATCTATTAGCGTGG 892
| |||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||
Sbjct 837 CTTTGGTCGTGAAGTCTCCAGAGACCTTCTATTTTCTAACCCTAAAATCTATTACCGTGG 896
Query 893 GAAGCAAGAATATGCAAACCCCAGACTCAAATATCAAGGGAAACATGGTCATCGATTCGG 952
||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 897 GAAGCAAGAATATGCCAACCCCAGGCTCTGATATCAAGGGAAACATGGTCATCGATTCGG 956
Query 953 GCACAACTCTAACGCTTTTACCAGTGAAATATTATATCGAGATTGAGAATGCTGTTGCGT 1012
||||||||||||| || ||||| | |||||||||| || ||||||||| |||||||||||
Sbjct 957 GCACAACTCTAACTCTGTTACCTGGGAAATATTATTTCCAGATTGAGAGTGCTGTTGCGT 1016
Query 1013 CCTTAATCAATGCAGATAAGTCGAAAGATGAAAGAATCGGTTCGAGTCTGTGTTACAATG 1072
| |||||| ||||||| | |||||||||||||||||||||||||||||| || |||||||
Sbjct 1017 CTTTAATCGATGCAGAGAGGTCGAAAGATGAAAGAATCGGTTCGAGTCTTTGATACAATG 1076
Query 1073 CAACCGCAGATCTGAATA-TCCCAGTCATTACTATGCATTTCGAAGGAGCAGATGTGAAG 1131
|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1077 CAACCGCAGATCTGAA-AGTCCCAGTCATTACTATGCATTTCGATGGAGCAGATGTGAAG 1135
Query 1132 CTTTATCCCTATAATTCATTTTTCAAAGTCACAGAAGATTTGGTTTGCTTGGCCTTTGGC 1191
||| || |||||||||||||||| |||||| |||| |||||||||||||| |||||||||
Sbjct 1136 CTTGATTCCTATAATTCATTTTTTAAAGTCTCAGATGATTTGGTTTGCTTTGCCTTTGGC 1195
Query 1192 ATGAGTTT--TTAT-AGGAATGGGATATACGGGAATGTGGCGCAGAAGAACTTTCTTGTT 1248
||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTGAACTTGATTACGAGGGATGGGATATACGGGAATGTGGCGCAGAAGAACTTTCTTGTT 1255
Query 1249 GGATACGACACTGCTTCCAAAACAATGTCATTTAAACCAACGGATTGTGCAAAGATGTA 1307
||||||||||||| ||||||| | ||||||||||| ||| |||||||||||||||||
Sbjct 1256 GGATACGACACTGTTTCCAAATCGTTGTCATTTAAAAAAACAGATTGTGCAAAGATGTA 1314
> AT5G33340.1 | Symbols: CDR1 | Eukaryotic aspartyl protease family
protein | chr5:12594467-12595952 FORWARD LENGTH=1486
Length=1486
Score = 1136 bits (615), Expect = 0.0
Identities = 1114/1346 (83%), Gaps = 70/1346 (5%)
Strand=Plus/Plus
Query 1 ATGGtctctctattcacttcagttctcttgtctctatgtttattctcttcacatattctc 60
|||| |||||||||| ||||||||||||||||||| |||||| ||||||||| | |||||
Sbjct 8 ATGGCCTCTCTATTCTCTTCAGTTCTCTTGTCTCTTTGTTTACTCTCTTCACTTTTTCTC 67
Query 61 tcaAACGTAAACGCCAAACCAAAACTAGGCTTCACCACCGATCTGATCCACCGTGATTCT 120
||||| | |||||| || |||||||||||||||||| | ||||| |||||||||||||||
Sbjct 68 TCAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127
Query 121 CCTAAATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAGCGTATAAGAAACGCTATC 180
||||||||||| |||||||||||| ||||||| ||||||||||| || ||||||| |||
Sbjct 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCTACGAAACGCGATC 187
Query 181 CACCGATCATTTAACCGTGTTTCCCATTTCACTGATCTCTCTGAAATGGATGCATCACTT 240
|||||||| |||||||||||| |||||||||||| ||| |||| | |||
Sbjct 188 CACCGATCCGTTAACCGTGTTTTCCATTTCACTGA--------AAA-GGAT--AACAC-- 234
Query 241 AACTC-ACCACAAACTGATATCACCCCATGTGGCGGTGAATATCTCATGAACCTATCCCT 299
| | | |||||| | ||| ||||| || | |||||||||||||||||||| ||||| |
Sbjct 235 ACCACAACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATCCAT 294
Query 300 TGGAACACCTCCTTCCCCGATCATGGCGGTCGCTGACACTGGAAGTAATCTCATCTGGAC 359
|||||||||||||| |||||||||||| |||| ||||| |||||| ||||| |||||||
Sbjct 295 TGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGGAC 354
Query 360 GCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAGC 419
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 GCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAAC 414
Query 420 GTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAATCA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 415 GTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAATCA 474
Query 480 AGCCTCTTGTTCCACAGAA-GATAAAACTTGCTCTTAC-CTTGTGTCTTACGCGGATGGC 537
|||||||||||||||| || || || ||||| |||||| | | ||||||||| |||| |
Sbjct 475 AGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCAT-TGTCTTACGGGGATAAC 532
Query 538 TCATACACAATGGGTAAGTTCGCTGTGGATACCTTAACACTCGGCTCCACCGATAACCGC 597
|||||||||| |||||| |||| |||||||||||||| |||||||||| ||||| ||||
Sbjct 533 TCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCGC 592
Query 598 CCGGTGCAGCTTAAGAATATTATCATCGGTTGTGGTCAGAACAACGCTGTAACATTTAGA 657
|| ||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| |
Sbjct 593 CCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTA-A 651
Query 658 -AACAAGAG-CTCTGGAGTCGTTGGACTTGGTGGTGGTGCAGTTTCGCTCATTAAGCAAC 715
|| || || ||||||| |||| ||||| ||||||||| | |||||||| || |||||||
Sbjct 652 CAAGAA-AGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAAC 710
Query 716 TCGGAGACTCCATCGACGGTAAATTCTCATACTGCTTGGTACCTG-AA-----AAT--G- 766
| || ||||||||||||||||||||||||||||||||||| ||| || || |
Sbjct 711 TTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGG 770
Query 767 ATCAAACGAGCAAGATCAACTTCGGAACTAATGCCGTTGTGTCGGGACCGGGAACTGTCT 826
|||||||||| || |||||||||||||| |||||| | ||||||||| | ||| |||||
Sbjct 771 ATCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCT 830
Query 827 CAACTCC-CTTGGTCGTGAAG---TCTCGAGATACCTTCTATTATCTAACCCTAAAATCT 882
||||||| || | ||| ||| |||| ||| ||||||||||| ||||||||||||||
Sbjct 831 CAACTCCTCT-GATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCC 889
Query 883 ATTAGCGTGGGAAGCAAG-AATATGCAA-AC-C---C-CAGACTC--AAAT-ATCAAGGG 932
|||||||||||||||||| || || ||| || | | |||| || ||| | | ||||
Sbjct 890 ATTAGCGTGGGAAGCAAGCAA-ATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGG 948
Query 933 AAACATGGTCATCGATTCGGGCACAACTCTAACGCTT-TTACC-AGTGAAATATTATATC 990
|||||| |||||||||| ||||||||| ||||| || ||||| | |||| | ||| ||
Sbjct 949 AAACATCATCATCGATTCAGGCACAACTTTAACG-TTATTACCGACTGAATT-TTAC-TC 1005
Query 991 -GAGATTGAGAATGCTGTTGCGTCCT-TAATCAATGCAGATAAGTCGAAAGATGAA-AGA 1047
||| | ||| |||| ||||| |||| || || |||| || ||| | ||||| | | |
Sbjct 1006 CGAGCTCGAGGATGCGGTTGCATCCTCTA-TCGATGCTGAGAAGAAGCAAGATCCACA-A 1063
Query 1048 ATCGGTTCGAGTCTGTGTTACAATGCAACCGCAGATCTGAATA-TCCCAGTCATTACTAT 1106
| ||||| |||||| ||||||| |||||||| |||||| || | | ||||||||||||||
Sbjct 1064 AGCGGTTTGAGTCTATGTTACAGTGCAACCGGAGATCTAAA-AGTTCCAGTCATTACTAT 1122
Query 1107 GCATTTCGAAGGAGCAGATGTGAAGCTTTA-TCCCTATAATTCATTTTT-CAAAGTCACA 1164
|||||| || ||||| |||||||||||| | ||| | ||| | ||| | ||| ||| |
Sbjct 1123 GCATTTTGATGGAGCCGATGTGAAGCTTGACTCC-TCCAATGCCTTTGTACAA-GTCTCG 1180
Query 1165 GAAGATTTGGTTTGCTTGGCCTTTGGCATGA-GTTTTTA-TAGGAATGGGATATACGGGA 1222
|| |||||||||||||| ||||| || || | | | | |||||||| |
Sbjct 1181 GAGGATTTGGTTTGCTTTGCCTTCCGCG-GAAGCCCG-AGTTTC--TCC-ATATACGGTA 1235
Query 1223 ATGTGGCGCAGAAGAACTTTCTTGTTGGATACGACACTGCTTCCAAAACAATGTCATTTA 1282
|||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1236 ATGTGGCGCAGATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTA 1295
Query 1283 AACCAACGGATTGTGCAAAGATGTAG 1308
| ||||| ||||||||||||||||||
Sbjct 1296 AGCCAACAGATTGTGCAAAGATGTAG 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5