BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891090 Length=1323 Score E Sequences producing significant alignments: (Bits) Value AT5G33340.1 | Symbols: CDR1 | Eukaryotic aspartyl protease fami... 1770 0.0 AT5G33350.1 | Symbols: | pseudogene, similar to P0406H10.5, nu... 1157 0.0 > AT5G33340.1 | Symbols: CDR1 | Eukaryotic aspartyl protease family protein | chr5:12594467-12595952 FORWARD LENGTH=1486 Length=1486 Score = 1770 bits (958), Expect = 0.0 Identities = 1213/1333 (91%), Gaps = 29/1333 (2%) Strand=Plus/Plus Query 1 ATGGCctctttattctcttcagttctcttgtctctttgtatactctcttcaccttttctc 60 ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 8 ATGGCCTCTCTATTCTCTTCAGTTCTCTTGTCTCTTTGTTTACTCTCTTCACTTTTTCTC 67 Query 61 tcAAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCT 120 ||||| |||||||| || ||||||||||||||||||| ||||| ||||||||||||||| Sbjct 68 TCAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127 Query 121 CCTAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGA-GAAACGCTAT 179 ||||||||||| ||||||||||||| ||||||||||||||||||| | | ||||||| || Sbjct 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCT-ACGAAACGCGAT 186 Query 180 CCACCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGATGCATCGGA 239 |||||||||||||| |||||||||||||||||||| |||||||| | | | Sbjct 187 CCACCGATCCGTTAACCGTGTTTTCCATTTCACTG---------AAAAGGAT--AAC--A 233 Query 240 TAACGC-ACCACAAATTGATCTCACCTCAAATAGCGGTGAATATCTAATGAACATATCTC 298 | | | |||||| ||||| |||||||||||||||||||||||||| |||||| |||| | Sbjct 234 CACCACAACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATC-C 292 Query 299 -TTGGAACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCCTGTGG 357 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 293 ATTGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGG 352 Query 358 ACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 417 ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 353 ACGCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 412 Query 418 GCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAAT 477 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 413 ACGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAAT 472 Query 478 CAAGCCTCTTGTTCCACAGAA-GACAACACTTGCTCTTACTCAACGTCTTACGGGGATCG 536 |||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||| Sbjct 473 CAAGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCATTGTCTTACGGGGATAA 531 Query 537 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGATACCCG 596 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 532 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCG 591 Query 597 CCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCACAACAACGCTGGAACGTTTAA 656 ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 592 CCCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTAA 651 Query 657 CAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCACGCAACT 716 |||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct 652 CAAGAAAGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAACT 711 Query 717 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTGAAAATGA 776 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 712 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGGA 771 Query 777 TCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAGTTGTCTC 836 || |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| Sbjct 772 TCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCTC 831 Query 837 AACTCCTTTGATCGCGAA---GTCTCAAGAGACTTTCTATTATCTAACCCTAAAATCTAT 893 ||||||| ||||||| || |||||||||||| |||||||| |||||||||||||| || Sbjct 832 AACTCCTCTGATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCCAT 891 Query 894 TAGCGTGGGAAGCAAGGAAGTCCAATACCCTGGCTCAGATTCTGGAAGTGGCGAGGGAAA 953 |||||||||||||||| || |||||||| | ||||||||||||| ||| |||||||||| Sbjct 892 TAGCGTGGGAAGCAAGCAAATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGGAAA 951 Query 954 CATCATCATTGATTCGGGCACAACCCTAACGTTGTTACCCACCGAATTTTACTCCGAGCT 1013 ||||||||| ||||| |||||||| ||||||| ||||| || ||||||||||||||||| Sbjct 952 CATCATCATCGATTCAGGCACAACTTTAACGTTATTACCGACTGAATTTTACTCCGAGCT 1011 Query 1014 CGAGGATGCGGTGGCTTCCTCAATCGATGCTGAGAAGAAACAAGATCCACAAACCGGTTT 1073 |||||||||||| || ||||| ||||||||||||||||| ||||||||||||| |||||| Sbjct 1012 CGAGGATGCGGTTGCATCCTCTATCGATGCTGAGAAGAAGCAAGATCCACAAAGCGGTTT 1071 Query 1074 GAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTACTATGCATTTCGA 1133 |||||| ||||| ||||||||||| ||||| |||||||||| ||||||||||||||| || Sbjct 1072 GAGTCTATGTTACAGTGCAACCGGAGATCTAAAAGTTCCAGTCATTACTATGCATTTTGA 1131 Query 1134 TGGAGCAGATGTGAATC-TGAAAC-CCTCCAATTG-CTTTGTACAAATCTCGGAGGATTT 1190 |||||| |||||||| | || || ||||||| || |||||||||| ||||||||||||| Sbjct 1132 TGGAGCCGATGTGAAGCTTG--ACTCCTCCAA-TGCCTTTGTACAAGTCTCGGAGGATTT 1188 Query 1191 GGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTCTCCATATACGGGAACGTGGCACAAAT 1250 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || || Sbjct 1189 GGTTTGCTTTGCCTTCCGCGGAAGCCCGAGTTTCTCCATATACGGTAATGTGGCGCAGAT 1248 Query 1251 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1308 Query 1311 TGCAAAGATGTAG 1323 ||||||||||||| Sbjct 1309 TGCAAAGATGTAG 1321 > AT5G33350.1 | Symbols: | pseudogene, similar to P0406H10.5, nucleoid DNA-binding protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996; blastp match of 37% identity and 1.5e-57 P-value to GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza sativa (japonica cultivar-group)} | chr5:12596785-12598098 FORWARD LENGTH=1314 Length=1314 Score = 1157 bits (626), Expect = 0.0 Identities = 1122/1352 (83%), Gaps = 71/1352 (5%) Strand=Plus/Plus Query 4 GCctctttattctcttcagttctcttgtctctttgtatactctcttcacct-tttctctc 62 |||||| ||||| ||||| ||||||||||||| ||| || ||||||| ||| ||| |||| Sbjct 1 GCCTCTCTATTCACTTCACTTCTCTTGTCTCTATGTTTATTCTCTTCTCCTATTT-TCTC 59 Query 63 AAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCTCC 122 |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| Sbjct 60 AAACGCAAACGCCAAACCAAAACTAGGCTTCACCGCGGATCTGATCCACCGCGATTCTCC 119 Query 123 TAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGAGAAACGCTATCCA 182 |||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||| Sbjct 120 TAAATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAACGTATGAGAAACGCTATCCA 179 Query 183 CCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGATGCATCGGATAA 242 ||||||| ||| ||||| || |||||||| | || | | | ||||||||||||| ||| Sbjct 180 CCGATCCTTTAACCGTGCTTCCCATTTCAGTAATCTTTTTGAAAAGGATGCATCACTTAA 239 Query 243 CGCACCACAAATTGATCTCACCTCAAATA--GCGGTGA-ATATCTAATGAACATATCTCT 299 ||||||||||| |||| ||| | |||||| |||| | |||||| |||||| |||| || Sbjct 240 CGCACCACAAACTGATATCA-C-CAAATATTTCGGT-ATATATCTTATGAACGTATCCCT 296 Query 300 T-GGA------ACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCC 352 | ||| |||||||| |||| ||||||||| |||||||||||||||||||||| Sbjct 297 TGGGAGTTGGGACACCTCCCGTCCCAATCATGGCGGCCGCTGACACCGGAAGTGATCTCA 356 Query 353 TGTGGACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACC 412 | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 357 TCTGGACGCAGTGCAAACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACC 416 Query 413 CTAAAGCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAG 472 ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| Sbjct 417 CTAAAGCGTCTTCCACATACAAAGACGTTTCTTGCCCCTCAAGCCAATGTAGGGCTCTA- 475 Query 473 AAA-ATCAAGCCTCTTGTTCCACAGAAGACAACACTTGCTCTTACTCAACGTCTTACGGG 531 ||| || | || |||||||||| | |||||||||||||||||||||||| | ||||||| Sbjct 476 AAAGATGATGCTTCTTGTTCCAAAAAAGACAACACTTGCTCTTACTCAATGAATTACGGG 535 Query 532 GATCGCTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGAT 591 ||| ||||||| || |||||| |||| |||||||||||||||||||||||||||||| Sbjct 536 GATAACTCATACTCACGGGGTAATGTCGCTGTGGATACCTTAACGCTCGGCTCCACCGAT 595 Query 592 ACCCGCCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCAC-AACAACGCTGGAAC 650 | ||| ||||||||| ||||||||||||| || |||||||||||| || ||||||| ||| Sbjct 596 AACCGTCCGGTGCAGGTTAAGAATATTATCATCGGTTGTGGTCACGAA-AACGCTGTAAC 654 Query 651 GTTTA-ACAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCA 709 |||| | || ||| ||||||||||||| ||||| ||||||||||||||||||||| | | Sbjct 655 ATTTAGA-AACAAGAGCTCTGGAATCGTTGGACTTGGTGGTGGTGCGGTTTCGCTCGTTA 713 Query 710 CGCAACTTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTG 769 ||||| || ||||||||||| ||||||||||||||||||||||| | | ||| Sbjct 714 AACAACTCGGAGACTCCATCGAAGGTAAATTCTCATACTGCTTGGT------A-C--CTG 764 Query 770 AAAATGATCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAG 829 ||||||||| ||||||||| || | |||||||||||||| |||||||||||| | ||| Sbjct 765 AAAATGATCAAACGAGCAAGATTAGTTTCGGAACCAATGCGGTTGTGTCGGGACCGGGAA 824 Query 830 TTGTCTCAACTCCTTTGATCGCGAAGTCTCAAGAGACTTTCTATTATCTAACCCTAAAAT 889 |||||||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||| Sbjct 825 CTGTCTCAACTCCTTTGGTCGTGAAGTCTCCAGAGACCTTCTATTTTCTAACCCTAAAAT 884 Query 890 CTATTAGCGTGGGAAGCAAGGA-A-GTCCAATACCCTGGCTCAGATTCTGGAAGTGGCGA 947 |||||| ||||||||||||| | | | |||| ||| ||||| ||| | | | | Sbjct 885 CTATTACCGTGGGAAGCAAGAATATG-CCAAC-CCCAGGCTCTGAT-----A--T--CAA 933 Query 948 GGGAAACATCATCATTGATTCGGGCACAACCCTAACGT-TGTTACCCACCGAATT-TTAC 1005 ||||||||| |||| |||||||||||||| ||||| | ||||||| ||| | ||| Sbjct 934 GGGAAACATGGTCATCGATTCGGGCACAACTCTAAC-TCTGTTACCTGG-GAAATATTAT 991 Query 1006 T-CCGAGCTCGAG-GATGCGGTGGCTTCCTCAATCGATGCTGAGAAGAA-ACAAGATCCA 1062 | || || | ||| | ||| || || || | ||||||||| |||| | | ||||| | Sbjct 992 TTCC-AGATTGAGAG-TGCTGTTGCGTCTTTAATCGATGCAGAGAGGTCGA-AAGATGAA 1048 Query 1063 CA-AACCGGTTTGAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTAC 1121 | || ||||| |||||| || || | |||||||| ||||||||||| |||| |||||| Sbjct 1049 -AGAATCGGTTCGAGTCTTTGATACAATGCAACCGCAGATCTGAAAGTCCCAGTCATTAC 1107 Query 1122 TATGCATTTCGATGGAGCAGATGTGAATCT-GAAACCCTCCAATTGC-TTTGTACAAA-T 1178 ||||||||||||||||||||||||||| || || || | |||| | ||| | ||| | Sbjct 1108 TATGCATTTCGATGGAGCAGATGTGAAGCTTGATTCC-TATAATT-CATTTTTT-AAAGT 1164 Query 1179 CTCGGAGGATTTGGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTC------TCC-ATAT 1231 ||| || |||||||||||||||||||| || || | || || | | |||| Sbjct 1165 CTCAGATGATTTGGTTTGCTTTGCCTTTGGCTTGAACTTGA-TTACGAGGGATGGGATAT 1223 Query 1232 ACGGGAACGTGGCACA-AATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTG 1290 ||||||| ||||| || || |||||||||||||||||||||||||||||||||| || || Sbjct 1224 ACGGGAATGTGGCGCAGAA-GAACTTTCTTGTTGGATACGACACTGTTTCCAAATCGTTG 1282 Query 1291 TCATTTAAGCCAACAGATTGTGCAAAGATGTA 1322 |||||||| ||||||||||||||||||||| Sbjct 1283 TCATTTAAAAAAACAGATTGTGCAAAGATGTA 1314 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65110106865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5