BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891090
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33340.1 | Symbols: CDR1 | Eukaryotic aspartyl protease fami... 1770 0.0
AT5G33350.1 | Symbols: | pseudogene, similar to P0406H10.5, nu... 1157 0.0
> AT5G33340.1 | Symbols: CDR1 | Eukaryotic aspartyl protease family
protein | chr5:12594467-12595952 FORWARD LENGTH=1486
Length=1486
Score = 1770 bits (958), Expect = 0.0
Identities = 1213/1333 (91%), Gaps = 29/1333 (2%)
Strand=Plus/Plus
Query 1 ATGGCctctttattctcttcagttctcttgtctctttgtatactctcttcaccttttctc 60
||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 8 ATGGCCTCTCTATTCTCTTCAGTTCTCTTGTCTCTTTGTTTACTCTCTTCACTTTTTCTC 67
Query 61 tcAAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCT 120
||||| |||||||| || ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 68 TCAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127
Query 121 CCTAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGA-GAAACGCTAT 179
||||||||||| ||||||||||||| ||||||||||||||||||| | | ||||||| ||
Sbjct 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCT-ACGAAACGCGAT 186
Query 180 CCACCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGATGCATCGGA 239
|||||||||||||| |||||||||||||||||||| |||||||| | | |
Sbjct 187 CCACCGATCCGTTAACCGTGTTTTCCATTTCACTG---------AAAAGGAT--AAC--A 233
Query 240 TAACGC-ACCACAAATTGATCTCACCTCAAATAGCGGTGAATATCTAATGAACATATCTC 298
| | | |||||| ||||| |||||||||||||||||||||||||| |||||| |||| |
Sbjct 234 CACCACAACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATC-C 292
Query 299 -TTGGAACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCCTGTGG 357
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 293 ATTGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGG 352
Query 358 ACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 417
||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ACGCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 412
Query 418 GCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAAT 477
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 413 ACGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAAT 472
Query 478 CAAGCCTCTTGTTCCACAGAA-GACAACACTTGCTCTTACTCAACGTCTTACGGGGATCG 536
|||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||
Sbjct 473 CAAGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCATTGTCTTACGGGGATAA 531
Query 537 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGATACCCG 596
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 532 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCG 591
Query 597 CCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCACAACAACGCTGGAACGTTTAA 656
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 592 CCCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTAA 651
Query 657 CAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCACGCAACT 716
|||||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||||
Sbjct 652 CAAGAAAGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAACT 711
Query 717 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTGAAAATGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 712 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGGA 771
Query 777 TCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAGTTGTCTC 836
|| |||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 772 TCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCTC 831
Query 837 AACTCCTTTGATCGCGAA---GTCTCAAGAGACTTTCTATTATCTAACCCTAAAATCTAT 893
||||||| ||||||| || |||||||||||| |||||||| |||||||||||||| ||
Sbjct 832 AACTCCTCTGATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCCAT 891
Query 894 TAGCGTGGGAAGCAAGGAAGTCCAATACCCTGGCTCAGATTCTGGAAGTGGCGAGGGAAA 953
|||||||||||||||| || |||||||| | ||||||||||||| ||| ||||||||||
Sbjct 892 TAGCGTGGGAAGCAAGCAAATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGGAAA 951
Query 954 CATCATCATTGATTCGGGCACAACCCTAACGTTGTTACCCACCGAATTTTACTCCGAGCT 1013
||||||||| ||||| |||||||| ||||||| ||||| || |||||||||||||||||
Sbjct 952 CATCATCATCGATTCAGGCACAACTTTAACGTTATTACCGACTGAATTTTACTCCGAGCT 1011
Query 1014 CGAGGATGCGGTGGCTTCCTCAATCGATGCTGAGAAGAAACAAGATCCACAAACCGGTTT 1073
|||||||||||| || ||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 1012 CGAGGATGCGGTTGCATCCTCTATCGATGCTGAGAAGAAGCAAGATCCACAAAGCGGTTT 1071
Query 1074 GAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTACTATGCATTTCGA 1133
|||||| ||||| ||||||||||| ||||| |||||||||| ||||||||||||||| ||
Sbjct 1072 GAGTCTATGTTACAGTGCAACCGGAGATCTAAAAGTTCCAGTCATTACTATGCATTTTGA 1131
Query 1134 TGGAGCAGATGTGAATC-TGAAAC-CCTCCAATTG-CTTTGTACAAATCTCGGAGGATTT 1190
|||||| |||||||| | || || ||||||| || |||||||||| |||||||||||||
Sbjct 1132 TGGAGCCGATGTGAAGCTTG--ACTCCTCCAA-TGCCTTTGTACAAGTCTCGGAGGATTT 1188
Query 1191 GGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTCTCCATATACGGGAACGTGGCACAAAT 1250
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||
Sbjct 1189 GGTTTGCTTTGCCTTCCGCGGAAGCCCGAGTTTCTCCATATACGGTAATGTGGCGCAGAT 1248
Query 1251 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1308
Query 1311 TGCAAAGATGTAG 1323
|||||||||||||
Sbjct 1309 TGCAAAGATGTAG 1321
> AT5G33350.1 | Symbols: | pseudogene, similar to P0406H10.5,
nucleoid DNA-binding protein cnd41, chloroplast - Nicotiana
tabacum, PIR:T01996; blastp match of 37% identity and 1.5e-57
P-value to GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5
{Oryza sativa (japonica cultivar-group)} | chr5:12596785-12598098
FORWARD LENGTH=1314
Length=1314
Score = 1157 bits (626), Expect = 0.0
Identities = 1122/1352 (83%), Gaps = 71/1352 (5%)
Strand=Plus/Plus
Query 4 GCctctttattctcttcagttctcttgtctctttgtatactctcttcacct-tttctctc 62
|||||| ||||| ||||| ||||||||||||| ||| || ||||||| ||| ||| ||||
Sbjct 1 GCCTCTCTATTCACTTCACTTCTCTTGTCTCTATGTTTATTCTCTTCTCCTATTT-TCTC 59
Query 63 AAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCTCC 122
|||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 60 AAACGCAAACGCCAAACCAAAACTAGGCTTCACCGCGGATCTGATCCACCGCGATTCTCC 119
Query 123 TAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGAGAAACGCTATCCA 182
|||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||
Sbjct 120 TAAATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAACGTATGAGAAACGCTATCCA 179
Query 183 CCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGATGCATCGGATAA 242
||||||| ||| ||||| || |||||||| | || | | | ||||||||||||| |||
Sbjct 180 CCGATCCTTTAACCGTGCTTCCCATTTCAGTAATCTTTTTGAAAAGGATGCATCACTTAA 239
Query 243 CGCACCACAAATTGATCTCACCTCAAATA--GCGGTGA-ATATCTAATGAACATATCTCT 299
||||||||||| |||| ||| | |||||| |||| | |||||| |||||| |||| ||
Sbjct 240 CGCACCACAAACTGATATCA-C-CAAATATTTCGGT-ATATATCTTATGAACGTATCCCT 296
Query 300 T-GGA------ACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCC 352
| ||| |||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 297 TGGGAGTTGGGACACCTCCCGTCCCAATCATGGCGGCCGCTGACACCGGAAGTGATCTCA 356
Query 353 TGTGGACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACC 412
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTGGACGCAGTGCAAACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACC 416
Query 413 CTAAAGCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAG 472
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 417 CTAAAGCGTCTTCCACATACAAAGACGTTTCTTGCCCCTCAAGCCAATGTAGGGCTCTA- 475
Query 473 AAA-ATCAAGCCTCTTGTTCCACAGAAGACAACACTTGCTCTTACTCAACGTCTTACGGG 531
||| || | || |||||||||| | |||||||||||||||||||||||| | |||||||
Sbjct 476 AAAGATGATGCTTCTTGTTCCAAAAAAGACAACACTTGCTCTTACTCAATGAATTACGGG 535
Query 532 GATCGCTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGAT 591
||| ||||||| || |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 536 GATAACTCATACTCACGGGGTAATGTCGCTGTGGATACCTTAACGCTCGGCTCCACCGAT 595
Query 592 ACCCGCCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCAC-AACAACGCTGGAAC 650
| ||| ||||||||| ||||||||||||| || |||||||||||| || ||||||| |||
Sbjct 596 AACCGTCCGGTGCAGGTTAAGAATATTATCATCGGTTGTGGTCACGAA-AACGCTGTAAC 654
Query 651 GTTTA-ACAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCA 709
|||| | || ||| ||||||||||||| ||||| ||||||||||||||||||||| | |
Sbjct 655 ATTTAGA-AACAAGAGCTCTGGAATCGTTGGACTTGGTGGTGGTGCGGTTTCGCTCGTTA 713
Query 710 CGCAACTTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTG 769
||||| || ||||||||||| ||||||||||||||||||||||| | | |||
Sbjct 714 AACAACTCGGAGACTCCATCGAAGGTAAATTCTCATACTGCTTGGT------A-C--CTG 764
Query 770 AAAATGATCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAG 829
||||||||| ||||||||| || | |||||||||||||| |||||||||||| | |||
Sbjct 765 AAAATGATCAAACGAGCAAGATTAGTTTCGGAACCAATGCGGTTGTGTCGGGACCGGGAA 824
Query 830 TTGTCTCAACTCCTTTGATCGCGAAGTCTCAAGAGACTTTCTATTATCTAACCCTAAAAT 889
|||||||||||||||| ||| |||||||| |||||| ||||||| ||||||||||||||
Sbjct 825 CTGTCTCAACTCCTTTGGTCGTGAAGTCTCCAGAGACCTTCTATTTTCTAACCCTAAAAT 884
Query 890 CTATTAGCGTGGGAAGCAAGGA-A-GTCCAATACCCTGGCTCAGATTCTGGAAGTGGCGA 947
|||||| ||||||||||||| | | | |||| ||| ||||| ||| | | | |
Sbjct 885 CTATTACCGTGGGAAGCAAGAATATG-CCAAC-CCCAGGCTCTGAT-----A--T--CAA 933
Query 948 GGGAAACATCATCATTGATTCGGGCACAACCCTAACGT-TGTTACCCACCGAATT-TTAC 1005
||||||||| |||| |||||||||||||| ||||| | ||||||| ||| | |||
Sbjct 934 GGGAAACATGGTCATCGATTCGGGCACAACTCTAAC-TCTGTTACCTGG-GAAATATTAT 991
Query 1006 T-CCGAGCTCGAG-GATGCGGTGGCTTCCTCAATCGATGCTGAGAAGAA-ACAAGATCCA 1062
| || || | ||| | ||| || || || | ||||||||| |||| | | ||||| |
Sbjct 992 TTCC-AGATTGAGAG-TGCTGTTGCGTCTTTAATCGATGCAGAGAGGTCGA-AAGATGAA 1048
Query 1063 CA-AACCGGTTTGAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTAC 1121
| || ||||| |||||| || || | |||||||| ||||||||||| |||| ||||||
Sbjct 1049 -AGAATCGGTTCGAGTCTTTGATACAATGCAACCGCAGATCTGAAAGTCCCAGTCATTAC 1107
Query 1122 TATGCATTTCGATGGAGCAGATGTGAATCT-GAAACCCTCCAATTGC-TTTGTACAAA-T 1178
||||||||||||||||||||||||||| || || || | |||| | ||| | ||| |
Sbjct 1108 TATGCATTTCGATGGAGCAGATGTGAAGCTTGATTCC-TATAATT-CATTTTTT-AAAGT 1164
Query 1179 CTCGGAGGATTTGGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTC------TCC-ATAT 1231
||| || |||||||||||||||||||| || || | || || | | ||||
Sbjct 1165 CTCAGATGATTTGGTTTGCTTTGCCTTTGGCTTGAACTTGA-TTACGAGGGATGGGATAT 1223
Query 1232 ACGGGAACGTGGCACA-AATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTG 1290
||||||| ||||| || || |||||||||||||||||||||||||||||||||| || ||
Sbjct 1224 ACGGGAATGTGGCGCAGAA-GAACTTTCTTGTTGGATACGACACTGTTTCCAAATCGTTG 1282
Query 1291 TCATTTAAGCCAACAGATTGTGCAAAGATGTA 1322
|||||||| |||||||||||||||||||||
Sbjct 1283 TCATTTAAAAAAACAGATTGTGCAAAGATGTA 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5