BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891115

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26320.1 | Symbols: AGL33 | AGAMOUS-like 33 | chr2:11205389-...   252    1e-66


> AT2G26320.1 | Symbols: AGL33 | AGAMOUS-like 33 | chr2:11205389-11206287 
REVERSE LENGTH=330
Length=330

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 222/262 (85%), Gaps = 12/262 (5%)
 Strand=Plus/Plus

Query  1    ATGGGAAGGAAGAAAA-TAAAACTGAATAGACTAGAAAGCCTGAAAGAGAGAAGTAGCAA  59
            ||||| ||||| |||| ||||| |||| ||| ||||   ||| |||||||||||||||||
Sbjct  49   ATGGGGAGGAA-AAAACTAAAATTGAAGAGAATAGAGTCCCTAAAAGAGAGAAGTAGCAA  107

Query  60   ATACTCAAAACGTAAAAAAGGGCTTTTCAAGAAGGCAGAAGAAGTAGCAATGTTGTGCGA  119
            ||  ||||||||||||||||| ||||| || |||||||||||||||||| |||| |||||
Sbjct  108  ATTTTCAAAACGTAAAAAAGGTCTTTTTAAAAAGGCAGAAGAAGTAGCATTGTTATGCGA  167

Query  120  -TTGTGAAATAATTTTGATTGTTGTTTCTCCGACCGACAAGCCTACCA-TTTTCCACACT  177
             | | || ||||| || |||||||||||||| ||||| ||||||| || ||||  |||||
Sbjct  168  CTCG-GATATAATGTTAATTGTTGTTTCTCCCACCGAGAAGCCTA-CAGTTTTTAACACT  225

Query  178  CGTTCTAAG-TCCTT-CAGTAAAAT-TTATGAGAGGTATTGCATGCTTTCATTACAAGAA  234
            |||||| || || || || || |||  | |||||||| ||||||||||||||||||||||
Sbjct  226  CGTTCT-AGATCATTCCA-TACAATCCT-TGAGAGGTTTTGCATGCTTTCATTACAAGAA  282

Query  235  CGGGAAGAAAGGTGTGATCTTT  256
            |||||||| |||||||||||||
Sbjct  283  CGGGAAGAGAGGTGTGATCTTT  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5