BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891116

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54770.1 | Symbols:  | Fcf2 pre-rRNA processing protein | ch...  95.3    4e-19


> AT1G54770.1 | Symbols:  | Fcf2 pre-rRNA processing protein | 
chr1:20434639-20436008 FORWARD LENGTH=927
Length=927

 Score = 95.3 bits (51),  Expect = 4e-19
 Identities = 69/77 (90%), Gaps = 4/77 (5%)
 Strand=Plus/Plus

Query  7    GAGACTAAAC-A--ATTGATCGGTCTTAAATGGGAACCAAAGCTTCTAGGCTTATCCTTA  63
            |||||||||| |  | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct  171  GAGACTAAACAACCACTGATCGGTCTTAAATGGGAACCAAAGCTTCCAGGCTTATCCTTA  230

Query  64   AGACCCGAAAACTGGTT  80
             |||  |||||||||||
Sbjct  231  -GACTTGAAAACTGGTT  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5