BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891118
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35160.2 | Symbols: | Endomembrane protein 70 protein famil... 2904 0.0
> AT5G35160.2 | Symbols: | Endomembrane protein 70 protein family
| chr5:13414945-13417265 FORWARD LENGTH=2321
Length=2321
Score = 2904 bits (1572), Expect = 0.0
Identities = 1702/1767 (96%), Gaps = 0/1767 (0%)
Strand=Plus/Plus
Query 127 AAGGATAGTGCTGAGAATTTAGGTGAACTTCTTATGGGAGATCGGATTGAGAATTCGCCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 AAGGATAGTGCTGAGAATTTAGGTGAACTTCTTATGGGAGATCGGATTGAGAATTCGCCT 270
Query 187 TATAGGTTTAAAATGTTTAAGAATGAGAGTGAGATCTTTCTCTGTCAGACTGACAAGTTG 246
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 271 TATAGGTTTAGAATGTTTAAGAATGAGAGTGAGATCTTTCTTTGTCAGACTGATAAATTG 330
Query 247 TCTGCTGATAGTTTTAAGCTTTTGAAGAAGAGGATTGATGAGATGTATCAGGTTAATCCT 306
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 331 TCTGCTGATAGTTTGAAGCTTTTGAAGAAGAGGATTGATGAGATGTATCAAGTTAATCCT 390
Query 307 ATGCTTGATAATTTACCGGCGATTCGGTATACGAAGAAAGATGGGTATGTTTTGAGGTGG 366
|||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 391 ATGCTTGACAATTTACCGGCGATTCGGTATACTAAGAGAGATGGGTATGTTTTGAGGTGG 450
Query 367 ACTGGGTATCCTGTTGGGATTAAGGTTCATGATGTTTATTATGTTTTTAATCATTTGAAG 426
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 451 ACTGGTTATCCTGTTGGGATTAAGGTTCAGGATGTTTATTATGTTTTTAATCATTTGAAG 510
Query 427 TTTAAGGTTCTTGTTCATAAGTATGAAGAGGCTGCTAATGTGGCTCGTGTGATGGGTACT 486
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 511 TTTAAGGTTCTTGTTCATAAGTATGAAGAAGCTGCTAATGTGGCTCGTGTGATGGGTACT 570
Query 487 GGTGATGCGGCTGAGGTGATTCCGACTGTTGGGAAGAAAGATTCTGATGTGCCTGGGTAT 546
|||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 571 GGTGATGCCGCTGAGGTCATTCCGACTATTGGGAAGAAAGATTCTGATGTCCCTGGTTAT 630
Query 547 ATGGTTGTTGGGTTTGAGGTTGTTCCTTGTAGCTTTGCTCATAATGGTGAATCTACAAAG 606
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 631 ATGGTTGTTGGGTTTGAGGTTGTTCCTTGTAGCTTTGCTCATAATGGTGAATCTACGAAG 690
Query 607 AAGTTGAAAATGTATGAAAGATATACAACTCCGATTAAATGTGATTCCATTAGTGTTTCT 666
||||||||||||||||| |||||||| |||||||||||||||||||||| ||| || |||
Sbjct 691 AAGTTGAAAATGTATGAGAGATATACTACTCCGATTAAATGTGATTCCACTAGGGTGTCT 750
Query 667 ATGTCTGTTAAGGAAGGTCAGTCTATTGTCTTCTCGTATGAAGTCAGTTTTGAGGAGAGT 726
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 751 ATGTCTGTTAAGGAAGGTCAGTCTATTGTCTTCTCTTATGAAGTCAGTTTTGAGGAGAGT 810
Query 727 GACATCAAATGGCCATCTAGATGGGATGCGTACTTGAAGATGGAGGGTTCAAAGGTTCAT 786
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 811 GACATCAAATGGCCATCTAGATGGGATGCGTACTTGAAGATGGAGGGTTCGAAGGTTCAT 870
Query 787 TGGTTCTCAATCTTGAACTCTCTTATGGTAATCACTTTCTTGGCCGGTATCGTTCTCGTG 846
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 871 TGGTTCTCAATCTTGAACTCTCTTATGGTAATCACTTTCTTGGCTGGTATTGTTCTGGTG 930
Query 847 ATATTCTTGAGAACTGTTAGGCGGGATTTGACTCGTTATGAGGAGCTTGACAAGGAGGCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ATATTCTTGAGAACTGTTAGGCGGGATTTGACTCGTTATGAGGAGCTTGACAAGGAGGCT 990
Query 907 CAAGCTCAGATGAATGAAGAGTTATCTGGGTGGAAGCTTGTCGTGGGTGATGTTTTCCGT 966
|||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 991 CAAGCTCAGATGAACGAAGAGTTGTCTGGATGGAAGCTTGTTGTGGGTGATGTTTTCCGT 1050
Query 967 GCTCCATCAAACGCCTCGCTTTTGTGTGTCATGGTTGGTGATGGAGTTCAGATTCTTGGC 1026
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1051 GCTCCATCAAATGCCTCGCTATTGTGTGTCATGGTTGGTGACGGAGTTCAGATTCTTGGC 1110
Query 1027 ATGGCTGTTGTAACCATTTTGTTTGCTGCTCTTGGGTTCATGTCACCGGCTTCACGTGGA 1086
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1111 ATGGCTGTTGTTACCATTTTGTTTGCTGCTCTAGGGTTCATGTCACCGGCTTCACGTGGA 1170
Query 1087 ACACTTATTACGGGTATGCTCTTCTTCTACATGATTCTTGGCATTGCAGCTGGTTATGTT 1146
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 ACACTTATTACTGGTATGCTCTTCTTCTACATGATTCTTGGCATTGCAGCTGGTTATGTT 1230
Query 1147 TCTGTTCGTCTCTGGAGGACAATTGGCTGTGGCGATCACCGTGGATGGATGTCTGTCGCA 1206
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1231 TCTGTTCGTCTTTGGAGGACAATTGGTTGTGGCGAACACCGTGGATGGATGTCTGTCGCA 1290
Query 1207 TGGAAAGCTGCTTGCTTTTTCCCAGGTATTGCGTTTCTGATCCTTACAACGCTGAACTTC 1266
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1291 TGGAAAGCTGCTTGCTTTTTCCCGGGTATTGCGTTTCTGATCCTTACAACGCTGAACTTC 1350
Query 1267 CTTCTATGGGGTAGCCATAGCACTGGAGCCATTCCTTTCTCTCTATTTGTCATCCTGCTC 1326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1351 CTTCTATGGGGTAGCCATAGCACTGGAGCCATTCCTTTCTCTCTATTTGTCATCCTCCTC 1410
Query 1327 CTCCTGTGGTTTTGCATCTCGGTTCCTCTCACTCTTATCGGCGGTTACTTTGGAGCCAAG 1386
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1411 CTCCTGTGGTTTTGCATCTCGGTTCCTCTAACTCTTATCGGTGGTTACTTTGGAGCCAAG 1470
Query 1387 GCTCCTCACATTGAATTCCCAGTTCGAACCAACCAAATTCCCCGGGAAATCCCAGCTCAG 1446
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1471 GCTCCTCACATTGAATTCCCAGTTCGAACAAACCAAATTCCCCGGGAAATCCCCGCTCAG 1530
Query 1447 AAATACCCATCCTGGCTTCTGGTTCTTGGCGCTGGAACACTTCCATTTGGGACCCTCTTC 1506
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1531 AAATACCCATCCTGGCTTCTGGTTCTTGGCGCTGGAACACTTCCATTCGGTACCCTCTTC 1590
Query 1507 ATCGAGCTTTTCTTCATCATGTCCAGCATCTGGATGGGCCGTGTCTACTACGTCTTTGGA 1566
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 ATCGAGCTTTTCTTTATCATGTCCAGCATCTGGATGGGCCGTGTCTACTACGTCTTTGGA 1650
Query 1567 TTCCTTTTTGTAGTCTTGATCCTTCTTGTGGTAGTGTGTGCTGAGGTTTCCCTAGTGCTA 1626
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1651 TTCCTTTTTGTAGTCTTGATCCTTCTTGTCGTAGTGTGTGCCGAGGTTTCCCTAGTGCTA 1710
Query 1627 ACATACATGCACCTGTGTGTTGAAGACTATAAATGGTGGTGGAAATCCTTCTTCGCATCA 1686
||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 1711 ACATACATGCACCTGTGCGTTGAAGACTATAAGTGGTGGTGGAAATCCTTCTTTGCATCT 1770
Query 1687 GGATCCGTTGCAATCTACATCTTCATATACTCTATAAACTATCTCGTCTTCGACCTTAAA 1746
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1771 GGATCCGTTGCAATCTACATCTTCATATACTCCATAAACTATCTCGTCTTCGACCTCAAA 1830
Query 1747 AGCTTAAGTGGACCCGTTTCAGCGACTCTTTATCTCGGCTACTCTCTGTTTATGGTCTTG 1806
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1831 AGCTTGAGTGGACCCGTTTCAGCGACTCTTTATCTCGGCTACTCTCTCTTTATGGTCCTG 1890
Query 1807 GCTATCATGCTCGCAACAGGTACTGTTGGTTTCCTCTCTTCTTTCTGGTTCGTGCACTAC 1866
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1891 GCTATCATGCTCGCAACAGGTACCGTTGGTTTCCTCTCTTCCTTCTGGTTCGTACACTAC 1950
Query 1867 TTGTTTTCTTCGGTCAAACTTGACTAA 1893
|||||||||||||| ||||||||||||
Sbjct 1951 TTGTTTTCTTCGGTGAAACTTGACTAA 1977
Score = 219 bits (118), Expect = 1e-55
Identities = 126/130 (97%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTCAATGGATCGATTTGGGATCTGGGTTTTGGCGATTTTGTCAGTGATTCAATCA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAGGTCAATGGATCGATTTGGGATCTGGGTTTTGGCGATTTTGTTAGTGATTCAATCA 60
Query 61 AGTTTTGGTTTTTACCTTCCAGGAAGCTATCCACATAAGTATGAAGTTGGTGATTACTTG 120
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTTTTGGGTTTTACCTTCCTGGAAGCTATCCACATAAGTATGAAGTTGGTGATTACTTG 120
Query 121 AATGTGAAGG 130
|| |||||||
Sbjct 121 AACGTGAAGG 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5