BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891152
Length=2934
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05710.1 | Symbols: ACO3 | aconitase 3 | chr2:2141399-214667... 3360 0.0
AT5G35601.1 | Symbols: | pseudogene, cytoplasmic aconitate hyd... 148 2e-34
> AT2G05710.1 | Symbols: ACO3 | aconitase 3 | chr2:2141399-2146678
FORWARD LENGTH=3493
Length=3493
Score = 3360 bits (1819), Expect = 0.0
Identities = 2475/2796 (89%), Gaps = 28/2796 (1%)
Strand=Plus/Plus
Query 151 CACTCGAAACCTTTTCCACTTCGCATCGGTTCTCAGATCAGAGCCGTTTCTCCTGTTTTA 210
||||||||||| | ||| ||||| || |||||||||||||| |||||||| || |||
Sbjct 382 CACTCGAAACCATCTCCGTTTCGCTTCACCTCTCAGATCAGAGCTGTTTCTCCAGTCTTA 441
Query 211 GACCGTCTCCAAAGAACTTTCTCTTCCATGGCTTCAGAGCATCCGTACAAAGGAATCTTC 270
|| |||||||| ||||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 442 GATCGTCTCCAGAGAACCTTCTCTTCCATGGCGTCAGAGCATCCGTTTAAAGGGATCTTC 501
Query 271 ACCACTCTTCCTAAGCCTGGTGGTGGCGAATTCGGAAAATTCTACAGCTTACCTGCTCTC 330
|| || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 502 ACTACACTTCCTAAGCCTGGTGGTGGTGAATTCGGAAAGTTCTATAGCTTACCTGCTCTT 561
Query 331 AATGATCCTCGCA-TTGATAAGCTTCCTTACTCTATAAGGATTCTTCTTGAATCTGCGAT 389
|| ||||| || | ||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 562 AACGATCCACG-AGTTGATAAACTTCCTTACTCTATTAGGATTCTGCTTGAATCTGCGAT 620
Query 390 TCGTAACTGTGATAACTTCCAAGTCACTAAGGAAGATGTTGAGAAGATTATTGATTGGGA 449
|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 621 TCGTAATTGTGATAACTTTCAAGTTACTAAGGAAGATGTTGAGAAGATTATTGACTGGGA 680
Query 450 AAATAC-TGCTCCTAAACTAGTCGAGATTCCTTTCAAACCTGCTCGTGTTCTTCTCCAGG 508
||| || | ||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||
Sbjct 681 AAAGACAT-CTCCTAAACAAGTAGAGATTCCTTTTAAACCAGCTCGTGTTCTTCTTCAGG 739
Query 509 ACTTTACTGGG-GTACCAGCTGTTGTTGATCTTGCTTGTATGCGTGATGCTATGAATAAA 567
||||||| ||| || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 740 ACTTTAC-GGGAGTCCCAGCTGTTGTTGACCTTGCTTGTATGCGTGATGCGATGAATAAG 798
Query 568 CTGGGGAGTGATTCCAATAAGATCAATCCATTGGTTCCGGTGGATCTTGTAATTGATCAC 627
||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct 799 CTGGGAAGTGATTCCAACAAAATCAATCCCTTGGTTCCGGTGGATCTTGTGATTGATCAC 858
Query 628 TCAGTTCAAGTTGATGTTGCAAGATCTGAGAATGCAGTTCAAGCCAACATGGAGCTTGAA 687
|| |||||||| ||||| || |||| ||||||||||| ||||| ||||||||||||||
Sbjct 859 TCGGTTCAAGTAGATGTAGCTCGATCAGAGAATGCAGTGCAAGCAAACATGGAGCTTGAG 918
Query 688 TTCCAGAGGAATAAGGAGAGGTTCGCTTTCCTTAAATGGGGTTCTACTGCTTTTCAAAAC 747
||||||||||| ||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct 919 TTCCAGAGGAACAAGGAGAGGTTTGCTTTCCTTAAATGGGGTTCTACTGCGTTCCAGAAC 978
Query 748 ATGCTTGTTGTGCCCCCTGGTTCTGGTATTGTGCATCAGGTTAACTTGGAATATCTGGGA 807
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 979 ATGCTTGTTGTGCCTCCTGGCTCTGGTATTGTGCATCAGGTCAATTTGGAATATCTTGGA 1038
Query 808 AGAGTTGTGTTCAATACCAAAGGTCTTCTCTACCCGGACAGTGTGGTTGGAACTGACTCA 867
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 1039 AGAGTTGTGTTCAATACCAAAGGCCTTCTCTACCCAGACAGCGTGGTTGGAACTGATTCA 1098
Query 868 CATACAACTATGATTGATGGGTTGGGAGTTGCTGGATGGGGGGTTGGAGGCATTGAAGCT 927
|||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||
Sbjct 1099 CATACAACTATGATTGATGGTTTGGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCT 1158
Query 928 GAGGCGACAATGCTTGGCCAGCCCATGAGTATGGTATTGCCTGGTGTTGTTGGATTCAAT 987
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GAGGCAACAATGCTTGGCCAGCCCATGAGTATGGTATTGCCTGGTGTTGTTGGATTCAAA 1218
Query 988 CT-GTCGGGAAAATTACGTAATGGTGTTACTGCTACTGATTTGGTTTTAACTGTGACCCA 1046
|| | ||| ||||| ||||||||||| || ||||||||||||||| |||| ||||| ||
Sbjct 1219 CTTGCCGGAAAAATG-CGTAATGGTGTAACAGCTACTGATTTGGTTCTAACAGTGACTCA 1277
Query 1047 AATACTGAGGAAACATGGTGTTGTTGGCAAGTTTGTTGAGTTTTATGGTGATGGTATGAG 1106
||| |||||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||
Sbjct 1278 AATGCTGAGGAAGCATGGCGTTGTTGGAAAGTTTGTTGAGTTTTATGGTAATGGCATGAG 1337
Query 1107 TGAACTGTCCCTGGCTGACAGGGCCACAATTGCCAATATGTCTCCTGAGTATGGTGCAAC 1166
|| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1338 TGGGCTGTCCCTAGCTGACAGGGCGACAATTGCCAATATGTCTCCCGAGTATGGTGCAAC 1397
Query 1167 CATGGGGTTCTTTCCTGTCGATCATGTTACTCTACAGTATCTTAAATTGACTGGAAGAAG 1226
|||||| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1398 CATGGGCTTCTTCCCTGTGGATCATGTTACTCTACAATATCTCAAATTGACTGGAAGAAG 1457
Query 1227 TGATGAGACGGTTGCCATGATTGAAGCATATCTTCGGGCAAATAATATGTTTGTTGACTA 1286
|||||||| || || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1458 CGATGAGACAGTGGCTATGATTGAAGCATATCTTCGGGCTAACAATATGTTTGTTGACTA 1517
Query 1287 CAGTGAGCCTCAGCAAGAGCGTGTTTACTCATCTTATCTGGAATTAAATCTGGAT-AGTG 1345
|| ||||||||||||||| || |||||||| || ||||| ||| | ||||||||| | ||
Sbjct 1518 CAATGAGCCTCAGCAAGACCGGGTTTACTCGTCATATCTAGAACTGAATCTGGATGA-TG 1576
Query 1346 TTGAACCTTGCATTTCCGGACCTAAGAGGCCACATGATCGTGTTCCTCTAAAAGAAATGA 1405
|||||||||||||||| ||||| ||| ||||||||||||||||| || | || |||||||
Sbjct 1577 TTGAACCTTGCATTTCTGGACCAAAGCGGCCACATGATCGTGTTACTTTGAAGGAAATGA 1636
Query 1406 AAGCTGACTGGCACTCATGT-TTAGACAGTAAAGTTGGGTTCAAGGGTTTCGCCATACCT 1464
||||||||||||| |||||| || |||||||||||||||||||||||||| || ||||||
Sbjct 1637 AAGCTGACTGGCATTCATGTCTT-GACAGTAAAGTTGGGTTCAAGGGTTTTGCTATACCT 1695
Query 1465 AAGGAGGCGCAAGAGAAGGTAGTAAAGTTTTCTTTCAATGGGCAACCTGCAGAGCTTAAA 1524
|| ||||| ||||| || || ||||| ||||| ||| |||| ||||| ||||||||||||
Sbjct 1696 AAAGAGGCACAAGAAAAAGTGGTAAATTTTTCGTTCGATGGACAACCAGCAGAGCTTAAA 1755
Query 1525 CATGGCAGTGTGGTCATTGCTGCGATCACAAGTTGCACTAATACATCAAACCCCAGTGTC 1584
||||| |||||||| |||||||| |||||||| || |||||||||||||| ||||| |||
Sbjct 1756 CATGGAAGTGTGGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAATCCCAGCGTC 1815
Query 1585 ATGCTTGGTGCTGCTCTTGTTGCCAAA-AAGGCCTGTGACCTTGGCCTACAGGTTAAGCC 1643
||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||||||||||
Sbjct 1816 ATGCTTGGTGCTGGTCTTGTTGC-AAAGAAGGCTTGTGACCTTGGGCTACAGGTTAAGCC 1874
Query 1644 TTGGACAAAAACAAGTCTTGCACCAGGTTCAGGAGTTGTTACAAAATACTTACTAAAGAG 1703
||||| ||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 1875 TTGGATAAAGACAAGTCTTGCTCCAGGCTCAGGAGTTGTTACAAAATACTTATTAAAGAG 1934
Query 1704 TGGCCTGCAAAAATATCTGAACCAGCAGGGTTTCAATATTGTTGGTTATGGCTGCACTAC 1763
||| ||||| |||||||||| | ||||||||||||||||| || || || ||||||||
Sbjct 1935 TGGATTGCAAGAATATCTGAATGAACAGGGTTTCAATATTGTCGGCTACGGGTGCACTAC 1994
Query 1764 ATGCATTGGCAACTCTGGAGAGATCGATGAATCAGTGGGAGCTGCCATTACAGAAAATGA 1823
|||||| || || ||||| || || ||||||||||||||||||| ||||| ||||||||
Sbjct 1995 ATGCATCGGGAATTCTGGGGAAATTAATGAATCAGTGGGAGCTGCTATTACCGAAAATGA 2054
Query 1824 CATTGTGGCTGCGGCTGTGCTTTCTGGGAACAGAAACTTTGAGGGCCGTGTTCATCCATT 1883
||||||||| || |||||||| || || ||||| ||||||||||| |||||||||||| |
Sbjct 2055 CATTGTGGCGGCTGCTGTGCTATCCGGTAACAGGAACTTTGAGGGGCGTGTTCATCCACT 2114
Query 1884 AACAAGAGCCAACTACCTTGCATCTCCACCTTTGGTGGTTGCCTATGCTCTTGCTGGAAC 1943
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 2115 AACAAGAGCCAATTACCTTGCATCTCCTCCGTTGGTGGTTGCCTATGCTCTTGCTGGCAC 2174
Query 1944 GGTTAACATTGACTTTGAGACAGAGCCCATTGGCAA-GGACAAGAATGGTAAGGATGTCT 2002
|||||||||||||||||| || ||||| |||||||| ||| |||||||| ||||| ||||
Sbjct 2175 GGTTAACATTGACTTTGAAACGGAGCCTATTGGCAAAGGA-AAGAATGGCAAGGACGTCT 2233
Query 2003 TCCTCAGGGATATCTGGCCCACCACAGAAGAAATTGCTCAGGTTGTTCAGTCCAGTGTGT 2062
|| | || ||||||||||| ||||| |||||||||||| |||||||||| |||||||| |
Sbjct 2234 TCTTAAGAGATATCTGGCCAACCACGGAAGAAATTGCTGAGGTTGTTCAATCCAGTGTTT 2293
Query 2063 TACCTGACATGTTCCGAGCTACTTATGAATCCATCACCAAGGGAAACCCGATGTGGAATC 2122
| ||||||||||||||||| || || || || ||||||||||| ||||| |||||||||
Sbjct 2294 TGCCTGACATGTTCCGAGCAACGTACGAGTCAATCACCAAGGGTAACCCCATGTGGAATA 2353
Query 2123 AGCTGTCTGTTCCTGAAAATACTCTCTACTCATGGGATCCTAAGTCAACTTACGTACACG 2182
|||||||||||||||| ||||| ||||||||||||||||| || ||||||||| | ||||
Sbjct 2354 AGCTGTCTGTTCCTGAGAATACCCTCTACTCATGGGATCCCAACTCAACTTACATTCACG 2413
Query 2183 AGCCTCCATACTTCAAGGACATGACCATGGATCCTCCCGGGCCG-AGCAGTGTGAAGGAT 2241
||||||||||||||||||||||||||||||||||||| || || | || ||||||||||
Sbjct 2414 AGCCTCCATACTTCAAGGACATGACCATGGATCCTCCTGGTCCACA-CAATGTGAAGGAT 2472
Query 2242 GCATACTGTTTACTGAACTTAGGCGACAGTATCACCACAGACCACATATCTCCAGCTGGA 2301
|| ||||||||||| || || || |||||||||||||| || ||||| || |||||||||
Sbjct 2473 GCTTACTGTTTACTCAATTTTGGGGACAGTATCACCACTGATCACATCTCACCAGCTGGA 2532
Query 2302 AGCATCCACAAGGACAGTCCCGCTGCAAAGTATCTCCTCGAACGGGGGGTTGACCGCAAA 2361
| |||||| ||||||||||| |||||||||| |||| | || || || |||||||| ||
Sbjct 2533 AACATCCAAAAGGACAGTCCTGCTGCAAAGTTTCTCATGGAGCGTGGCGTTGACCGTAAG 2592
Query 2362 GATTTCAACTCATATGGAAGTCGACGTGGAAACGATGAAATTATGGCTAGGGGAACATTT 2421
|| |||||||||||||||||||| ||||| || |||||||| ||||| || || || |||
Sbjct 2593 GACTTCAACTCATATGGAAGTCGCCGTGGGAATGATGAAATAATGGCCAGAGGTACTTTT 2652
Query 2422 GCAAATATCAG-ACTTGTTAATAAGCTGTTGAATGGAGAAGTTGGCCCTAAGACGGTTCA 2480
|| |||||| | | | ||||| ||||| ||||||| ||||||||||||||||| |||||
Sbjct 2653 GCTAATATCCGTA-TCGTTAACAAGCTCATGAATGGTGAAGTTGGCCCTAAGACTGTTCA 2711
Query 2481 CATTCC-TACTGGAGAGAAGCTATCTGTCTTCGATGCAGCCATGAGATACAAAG-CAGCT 2538
|||||| | ||||||||||||| || ||||| || || |||||||| ||||| | || ||
Sbjct 2712 CATTCCAT-CTGGAGAGAAGCTCTCAGTCTTTGACGCTGCCATGAGGTACAA-GTCATCT 2769
Query 2539 GGTGAGGCCACCATTATTCTGGCTGGAGCTGAGTATGGTAGTGGTAGCTCCCGTGATTGG 2598
||||| | ||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2770 GGTGAAGACACAATTATTCTGGCTGGAGCTGAGTATGGAAGTGGTAGCTCACGTGATTGG 2829
Query 2599 GCTGCCAAGGGACCCATGTTACAGGGCGTTAAAGCAGTGATCT-CAAAGAGTTTTGAAAG 2657
|||||||||||||||||| ||||||| |||||||| ||||| | ||||||||||||| ||
Sbjct 2830 GCTGCCAAGGGACCCATGCTACAGGGTGTTAAAGCGGTGAT-TGCAAAGAGTTTTGAGAG 2888
Query 2658 GATTCACCGGAGTAACTTGGTGGGAATGGGAATCATCCCACTGTGTTTTAAGTCTGGTGA 2717
||||||||| || ||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 2889 GATTCACCGAAGCAACTTGGTGGGAATGGGAATCATCCCATTGTGCTTTAAGTCCGGTGA 2948
Query 2718 GGATGCAGACACCCTTGGATTGACAGGTAAGGAGCGTTACACCATCCATCTCCCAACCGA 2777
|| ||||| || ||||||||||| ||| | || || ||||| |||||||||||||||||
Sbjct 2949 AGACGCAGATACTCTTGGATTGACTGGTCACGAACGCTACACGATCCATCTCCCAACCGA 3008
Query 2778 TATCTCGGAGATAAGACCTGGGCAAGATGTTACTGTCACTACAGACA-CTGGAAAATCTT 2836
|||||| |||||||||||||| ||||||||||| |||||||| |||| | ||||||||||
Sbjct 3009 TATCTCAGAGATAAGACCTGGCCAAGATGTTACCGTCACTACCGACAAC-GGAAAATCTT 3067
Query 2837 TCACCTGCACAGTCCGCTTTGACACTGAGGTGGAACTGGCTTACTTCAACCACGGAGGCA 2896
|||| |||||||||||||| ||||| ||||||||| |||| ||||| ||||| |||||||
Sbjct 3068 TCACTTGCACAGTCCGCTTCGACACAGAGGTGGAATTGGCATACTTTAACCATGGAGGCA 3127
Query 2897 TACTTCCATATGTGATCAGAAACTTGAGCAAGCAAT 2932
||||||||||||| ||||||||||||||||||||||
Sbjct 3128 TACTTCCATATGTTATCAGAAACTTGAGCAAGCAAT 3163
> AT5G35601.1 | Symbols: | pseudogene, cytoplasmic aconitate hydratase,
similar to cytoplasmic aconitate hydratase; blastp
match of 77% identity and 2.4e-53 P-value to SP|O04916|ACOC_SOLTU
Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase) (Fragment). (Potato) {Solanum tuberosum}
| chr5:13776348-13777103 REVERSE LENGTH=756
Length=756
Score = 148 bits (80), Expect = 2e-34
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 2523 GAGATACAAAGCAGCTGGTGAGGCCACCATTATTCTGGCTGGAGCTGAGTATGGTAGTGG 2582
|||||||||||||||| || ||||||| |||||||||| |||||||||||||||||||||
Sbjct 233 GAGATACAAAGCAGCTTGTTAGGCCACAATTATTCTGGTTGGAGCTGAGTATGGTAGTGG 292
Query 2583 TAGCTCCCGTGATTGGGCTGCCAAGGGACCCATGTTACAGG 2623
|||||||||||||| ||||||||| |||||||||||||||
Sbjct 293 TAGCTCCCGTGATTTAGCTGCCAAGAGACCCATGTTACAGG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145835303301
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5