BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891161

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35660.1 | Symbols:  | Glycine-rich protein family | chr5:13...   582    1e-165


> AT5G35660.1 | Symbols:  | Glycine-rich protein family | chr5:13852390-13853717 
REVERSE LENGTH=1251
Length=1251

 Score =  582 bits (315),  Expect = 1e-165
 Identities = 423/472 (90%), Gaps = 20/472 (4%)
 Strand=Plus/Plus

Query  1    ATGAATACGAAAACGTTAATAGTATGGTTTCTTTTGTTAGCGGCTGTTGTTGTAGCTGTC  60
            ||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||| 
Sbjct  13   ATGAATACGAAAACGTTTATTGTATGGTTTCTTTTGGTAGCGGCGGTTGTTGTAGCTGTT  72

Query  61   GCTGCAGAGACTTCCGTGGATGACAAGAAACAAGGTGAAAAGCAAGTAGAGATACCAACC  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   GCGGCAGAGACTTCCGTGGATGACAAGAAACAAGGTGAAAAGCAAGTAGAGATACCAACC  132

Query  121  GTAGAAGGGAAAAACGACGACGCTAAGGATACTCTCAATCAAGGAGACGTTGGCGTTGAG  180
            |||||||| |||||  ||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct  133  GTAGAAGG-AAAAA--ACGACGCTAAGGATAGTCTCAATAAAGGAGACGTTGGTGTTGAG  189

Query  181  GCTACGGTTGAGAAAGAGGAAGAAAACAGTTATGAAGTTGATCAagga-ggaggaggatg  239
            ||||| |||||||||||||||||||||| ||||||| ||||||||  | || || |||||
Sbjct  190  GCTACCGTTGAGAAAGAGGAAGAAAACAATTATGAAATTGATCAAC-ATGGTGGGGGATG  248

Query  240  gaaaggaggcggtggccgaggaggtgggggatggaagggaggtggtggccgaggaggtgg  299
            ||| |||||||| |||| | | | |||||||||||| ||||| || |||| | | | |||
Sbjct  249  GAAGGGAGGCGGCGGCC-ATG-G-TGGGGGATGGAAAGGAGGCGGCGGCC-ATG-G-TGG  302

Query  300  gggatggaagggaggcggtggccgaggaggtgggggatggaagggaggcggtggccgagg  359
            ||||||||| ||||||||||||| | | | |||||||||||||||||||||||||| | |
Sbjct  303  GGGATGGAAAGGAGGCGGTGGCC-ATG-G-TGGGGGATGGAAGGGAGGCGGTGGCC-ATG  358

Query  360  aggtggaggatggaaaggaggcggtggt---cgaggaggtggtggtggaggcggtgCTGA  416
             | ||| |||||||||||||| ||||||   |||||||||||||||||||||||||||||
Sbjct  359  -G-TGGGGGATGGAAAGGAGGAGGTGGTGGTCGAGGAGGTGGTGGTGGAGGCGGTGCTGA  416

Query  417  GTTAGACACCGTAGAAATAGATAGTGCGTCAGATGATGATGTACAAAATTAT  468
            |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  417  GTTAGAGACCGTAGAAATAGATAGTGCGTCAGATGAGGATGTACAAAATTAT  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5