BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891186
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35770.1 | Symbols: SAP | Transducin/WD40 repeat-like superf... 2030 0.0
> AT5G35770.1 | Symbols: SAP | Transducin/WD40 repeat-like superfamily
protein | chr5:13936086-13940867 REVERSE LENGTH=1793
Length=1793
Score = 2030 bits (1099), Expect = 0.0
Identities = 1270/1352 (94%), Gaps = 13/1352 (1%)
Strand=Plus/Plus
Query 1 ATGTCTACCTCCTCCTCTTCTTCCAACAACGGAGACTCCGACGCCGGTGGAAGCGGCGGC 60
|||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct 82 ATGTCTACCTCCTCCTCTTCTTCCGACAAC---G-----GA-GCCGGTGGAAGCGGCGGC 132
Query 61 GTTTTCGAGGCCCCTTCTCCTTCTCGCCCCCGCCGTGGCGCTAACGACGTCTGGCCGGAG 120
|||||||||||||| ||||| || ||||| ||||| || || ||||| || |||||||||
Sbjct 133 GTTTTCGAGGCCCCATCTCCATCCCGCCCTCGCCGCGGAGCCAACGATGTTTGGCCGGAG 192
Query 121 CCTTTTCTTGAATCTCTCGCCGTTCAGGTCGCCGTTAATGCTTCCTCATCCTCCGGCCTC 180
|||||||||||||||||||||||||| || |||||||| |||||| ||||| ||||||||
Sbjct 193 CCTTTTCTTGAATCTCTCGCCGTTCAAGTTGCCGTTAACGCTTCCACATCCGCCGGCCTC 252
Query 181 CTCGCCTCAGCTCCGGCTCTTGCCAACGTTTTTCGGGTTTGCACCACGTGGCAAGCTGTC 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 253 CTCGCCGCAGCTCCGGCTCTTGCCAACGTTTTTCGGGTTTGCACCACGTGGCACGCTGTC 312
Query 241 TCTCGCTCCGACCATCTATGGCAACTCCTCTCTCGCCAAGTTTGGGCAAGAACACATTTG 300
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 313 TCTCGCTCCGACCATCTATGGCAACTACTATCTCGCCAAGTTTGGGCAAGAACACATTTG 372
Query 301 ATGCACGACACGTGGCGGGATGAGTTCATCTACCGTCATCGAACGGCCAGAAACTTCCGG 360
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 373 ATGCACGACACGTGGCGGGACGAGTTCATCTACCGTCATCGGACGGCTAGAAACTTCCGG 432
Query 361 ACGCGTACTCACACCTACTTCACTCTCCAATTTGACCCGTCTGATGTGGACGAGCCTGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ACGCGTACTCACACCTACTTCACTCTCCAATTTGACCCGTCTGATGTGGACGAGCCTGAT 492
Query 421 AGTCTCTCATGCCGTTGTCTCACTCTCTCCGACCTCTACTTAGCCGCAGGGTTCGCCGAC 480
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 493 AGTCTCTCTTGCCGTTGTCTCACCCTCTCAGACCTCTACTTAGCCGCAGGGTTCGCCGAC 552
Query 481 GGAACCGTCCGCCTCTTTCTTTTAAATAGCCGTCTCCACGTCAGGA-CTCTACGGCCACC 539
||||||||||| || ||||||||||| | ||| ||||||||||||| || ||||||||||
Sbjct 553 GGAACCGTCCGGCTTTTTCTTTTAAACAACCGACTCCACGTCAGGACCT-TACGGCCACC 611
Query 540 TCTACGTGACCGCTTTGGCAGATTCTCACGAGCCGTCTCGGGCATTTTTATATCCGACTC 599
|||||||||||||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct 612 TCTACGTGACCGCTTTGGTAGATTCTCACGAGCCGTCTCAGGCATTGTTATCTCCGACTC 671
Query 600 AAGACTCACGTTTGCTACGATGGACGGAGACATCCACGTGGCGGAAATAGACGGCGTTGG 659
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 672 AAGGCTCACGTTCGCTACGATGGACGGAGACATCCACGTGGCGGAAATAGACGGTGTTGG 731
Query 660 TCATACACGCACGGCTTACGCCGGAGATATAGTTAACGACGGTGCTTTGGTAGATTTCAC 719
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 732 TCACACACGCACGGCTTACGCAGGAGATATAGTTAACGACGGTGCGTTGGTAGATTTCAC 791
Query 720 TGGCTGTGGACGTTGGTGGGTCGGTCTTTTCGCTGGTGTACCAGGTCGTGCCTTTCACAT 779
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 792 TGGCTGTGGACGTTGGTGGGTCGGTCTTTTCGCGGGTGTGCCAGGTCGTGCCTTTCACAT 851
Query 780 ATGGGACTGTAACAGCGAGGAGACAACATTCGTCGGTGGTTCACTCACTGATCCAGAAGC 839
|||||||||||||||||| ||||||||||||||||||||| ||||||| || || |||||
Sbjct 852 ATGGGACTGTAACAGCGAAGAGACAACATTCGTCGGTGGTACACTCACCGACCCTGAAGC 911
Query 840 CGTCATGGGTTGGCACACGTTAACAGAGCTAACAACGTCGCTTGGCCGACTAAGAATCTC 899
|||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 912 TGTCATGGGATGGCACACGTTAACAGAGCTAACAACGTCCCTTGGCCGTCTCAGAATCTC 971
Query 900 CGGCAACGAGACAGCCGTAGCATGCACGAGATGGAGGATCATGGTGATCGATCTAAGAAA 959
||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 972 CGGTAACGAGACGGCGGTAGCATGCACGAGATGGAGAATCATGGTGATCGATCTAAGAAA 1031
Query 960 CCAAGGAGTGATCATCGGAGAAGACGAAGAGCAACGTAGAGGACTAATAGTAACAGGCTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1032 CCAAGGAGTGATCATCGGAGAAGACGAAGAGCAACGTAGAGGACTAATAGTGACAGGCTT 1091
Query 1020 CGACGCCAACGACGAAGCGTACCTTAGAATGGACAGTAGAGGTAACGCGAGAGTGCGCAG 1079
||| |||||||||||||||||| ||||| ||||||||||||| ||||| || ||||| ||
Sbjct 1092 CGATGCCAACGACGAAGCGTACGTTAGATTGGACAGTAGAGGAAACGCTAGCGTGCGAAG 1151
Query 1080 GGTGAACACACTACAAACGGTGTGTGAGTTCCGTGTGAGTGGAGCGGCGCAGAGAAGAGT 1139
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1152 GGTGAACACGCAACAAACGGTGTGTGAGTTCCGTGTTAGTGGAGCGGCGCAGAGAAGAGT 1211
Query 1140 CATGGGTTGTGTTAATAGACTGCACGCGCTAATGTGCGCAGGTGGTATAATGCGCGTGTG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AATGGGTTGTGTTAATAGACTGCACGCGCTAATGTGCGCAGGTGGTATAATGCGCGTGTG 1271
Query 1200 GGAGGTAGAGAGAGGAGAGTATCTGTACAGTATTAGGGAGAGAGTAGGAGAAGTTGACGC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGAGGTAGAGAGAGGAGAGTATCTGTACAGTATTAGGGAGAGAGTAGGAGAAGTTGACGC 1331
Query 1260 CATTGTTGCCGATGATAGACATGTGGCGGTTGCTTC-GTCTTCATCAACGGCTCAGAGTA 1318
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1332 CATTGTTGCCGATGATAGACATGTGGCGGTTGCGTCAG-CTTCATCAACGGCTCAGAGTA 1390
Query 1319 TTATACATCTATGGGATTTCGGTGCACTGTAG 1350
||||||||||||||||||||||||||||||||
Sbjct 1391 TTATACATCTATGGGATTTCGGTGCACTGTAG 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5