BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891201

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43745.1 | Symbols:  | Protein of unknown function (DUF1012)...   272    7e-73


> AT5G43745.1 | Symbols:  | Protein of unknown function (DUF1012) 
| chr5:17569147-17574971 REVERSE LENGTH=2759
Length=2759

 Score =  272 bits (147),  Expect = 7e-73
 Identities = 173/186 (93%), Gaps = 0/186 (0%)
 Strand=Plus/Plus

Query  1    GATAGCGCAAAGGATATGTCAAGAGCTTCCCCGCCTCGTTCAGAACTCATTGGGGGCTGG  60
            ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  308  GATAGCGCAAAAGATATGTCAAGAGCTTCCTCGCCTCGTTCAGAACTCAGTGGGGGCTGG  367

Query  61   CTTGCCTTTTGCTTATGTATCAAACTCTCGACCTACTCCTCTCAAGTTAGACGTCTCCGT  120
            |||||||||||||| || ||| ||||||| |||||||||||||||||| || |||||  |
Sbjct  368  CTTGCCTTTTGCTTGTGCATCGAACTCTCTACCTACTCCTCTCAAGTTGGATGTCTCATT  427

Query  121  TCATTCTTTTCAAGATATCAGATGGGGTCTTGCAAGGTTTCTTTACCTGCTCAATATTCA  180
            || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  428  TCCTTCTTTTCAAGATATCAGATGGGGTCTTGCAAGGTTTCTTTACCTGTTCAATATTCA  487

Query  181  GCTTGA  186
            ||||||
Sbjct  488  GCTTGA  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8199120213


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5