BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891202
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15750.1 | Symbols: | Essential protein Yae1, N-terminal | ... 573 7e-163
AT1G34570.1 | Symbols: | Essential protein Yae1, N-terminal | ... 553 9e-157
AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function (D... 119 4e-26
> AT3G15750.1 | Symbols: | Essential protein Yae1, N-terminal
| chr3:5335078-5336476 FORWARD LENGTH=903
Length=903
Score = 573 bits (310), Expect = 7e-163
Identities = 462/531 (87%), Gaps = 27/531 (5%)
Strand=Plus/Plus
Query 163 GATCCCTTTTACGGAAGTTCGGATGAAGAACA-TAGTAGTGAAGCTCGCGTGTTGGACAA 221
|||||||||||||||||||| ||||||||| | || |||||||||||||||||||| |||
Sbjct 90 GATCCCTTTTACGGAAGTTCAGATGAAGAAGACTA-TAGTGAAGCTCGCGTGTTGGGCAA 148
Query 222 TGAGAATAAGTTGAGACTTGTTAAATTCCACACGGCTGGATACCGTGATGGGATTGTCGC 281
|||||||||| ||||| ||| ||||||||| |||||||||| |||||||||||||| ||
Sbjct 149 TGAGAATAAGCAGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGTTGC 208
Query 282 CGGGAAAGAAGCTATTGCGCAACAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTGA 341
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 209 CGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTAA 268
Query 342 TGCCTACAAATTTGGTATTGTTAGAGGTGTTTCCAGTGCACTGGCTTTCCTCCCAGATGA 401
|| ||| | |||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 269 TGGTTACCAGTTTGGTCTTGTTAGAGGTGTTTCCAGTGCGTTGGCTTTCCTCCCGGATGA 328
Query 402 GCTAAGAGAGAAGCTGATCGATGAACAAGAAACTCGAGATAATTTTCAGAAATTACACAG 461
||| ||||| ||||| |||||| ||||||||||| |||| || |||||||||||||||||
Sbjct 329 GCTTAGAGAAAAGCTTATCGATAAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAG 388
Query 462 TTGTGTGCATGC-CTTATC-ACCGGAAGTAGCAATGAAGCGGTTCTATGAAACGCTGACT 519
|| ||||||||| ||| || || |||||| ||||||||||||||||||||||| |||||
Sbjct 389 TTCTGTGCATGCTCTT-TCGAC-GGAAGTCGCAATGAAGCGGTTCTATGAAACTTTGACT 446
Query 520 ACAAAGCAAAGGGAAG-GAAAGAGTGGAGATCAAGGG------TCT-GA-CA-AT---GG 566
|| |||||| |||||| ||| ||||||||| ||||| ||| | | || ||
Sbjct 447 ACGAAGCAAGGGGAAGAGAA-GAGTGGAGAAGAAGGGCCCGACTCTTGTTCTGATTCAGG 505
Query 567 TTCTGGTTCGGGTGTTAATGCTGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAG 626
||||||||| |||||||||| | | ||||||||||| |||||||||||||||||||||||
Sbjct 506 TTCTGGTTCAGGTGTTAATG-T-C-ACAACCGACTTAGGAAGCTATGTTACTGAGCTAAG 562
Query 627 CTCTCTTCTTGACAAATCTCCTAA-GATTGACA-TTAAATTGGACACATAG 675
|||||||||||||||||||| || |||||| | ||||||| |||||||||
Sbjct 563 TTCTCTTCTTGACAAATCTCC-AACGATTGA-AGTTAAATTTGACACATAG 611
> AT1G34570.1 | Symbols: | Essential protein Yae1, N-terminal
| chr1:12654940-12656486 REVERSE LENGTH=1026
Length=1026
Score = 553 bits (299), Expect = 9e-157
Identities = 467/545 (86%), Gaps = 24/545 (4%)
Strand=Plus/Plus
Query 146 GTCTTGAGAATTCAGAGGATCCCTTTTACGGAAGTTCGGATGAAGAACATAGTAGTGAAG 205
|||||||||||| ||| |||||||||||||||||||| ||||||| | || ||||||||
Sbjct 134 GTCTTGAGAATTTAGATGATCCCTTTTACGGAAGTTCAGATGAAG-A-TTA-TAGTGAAG 190
Query 206 CTCGCGTGTTGGACAATGAGAATAAGTTGAGACTTGTTAAATTCCACACGGCTGGATACC 265
||||||||||||||||||||||| || ||||| ||| ||||||||| |||||||||| |
Sbjct 191 CTCGCGTGTTGGACAATGAGAATGAGCAGAGACGTGTGAAATTCCACTCGGCTGGATATC 250
Query 266 GTGATGGGATTGTCGCCGGGAAAGAAGCTATTGCGCAACAAGGTTATAACTTTGGCTATA 325
||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 251 GTGATGGGATTGTTGTCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATA 310
Query 326 AGGAATCAGTTCTTGATGCCTACAAATTTGGTATTGTTAGAGGTGTTTCCAGTGCACTGG 385
||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 311 AGGAATCAGTTCTTGCTGGTTACAAGTTTGGTATTGTTAGAGGTGTTTCTAGTGCGCTGG 370
Query 386 CTTTCCTCCCAGATGAGCTAAGAGAGAAGCTGATCGATGAACAAGAAACTCGAGATAATT 445
|||||||||| | |||| | ||||| ||||| |||||||||||||||||| |||| || |
Sbjct 371 CTTTCCTCCCGGTTGAGTTTAGAGAAAAGCTTATCGATGAACAAGAAACTAGAGAGAAGT 430
Query 446 TTCAGAAATTACACAGTTGTGTGCATGC-CTTATC-ACCGGAAGTAGCAATGAAGCGGTT 503
|||||||||||||||||| ||||||||| ||| || || |||||| |||||||||| |||
Sbjct 431 TTCAGAAATTACACAGTTCTGTGCATGCTCTT-TCGAC-GGAAGTCGCAATGAAGCAGTT 488
Query 504 CTATGAAACGCTGACTAC-AAAGCAAAGGGAAG-GAAAGAGTGGAGATCAAGGGTCTGAC 561
||||||||| ||||||| ||| ||| |||||| ||| ||||||||| ||||| | |||
Sbjct 489 CTATGAAACTTTGACTACGAAA-CAAGGGGAAGAGAA-GAGTGGAGAAGAAGGGCCCGAC 546
Query 562 AATGGTTCTGGTTCGGGT----GTTAA--TGCT---GCCACAACCGACTTGGGAAGCTAT 612
| |||||| ||| ||| ||| | || | | |||| ||||||| |||||||||
Sbjct 547 TCTTGTTCTGTTTCAGGTTCTTGTTCAGGTGTTAATGTCACAGCCGACTTAGGAAGCTAT 606
Query 613 GTTACTGAGCTAAGCTCTCTTCTTGACAAATCTCCTAA-GATTGACATT-AAATTGGACA 670
|||||||||||||| |||||||||||||||||||| || |||||| | | ||||| || |
Sbjct 607 GTTACTGAGCTAAGTTCTCTTCTTGACAAATCTCC-AACGATTGA-AGTGAAATTTGATA 664
Query 671 CATAG 675
|||||
Sbjct 665 CATAG 669
> AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function
(DUF616) | chr1:12646696-12652646 REVERSE LENGTH=2600
Length=2600
Score = 119 bits (64), Expect = 4e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 567 TTCTGGTTCGGGTGTTAATGCTGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAG 626
||||||||||||||||||||| | |||| |||| ||| ||||||||||||||||||||
Sbjct 165 TTCTGGTTCGGGTGTTAATGC--C-ACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAG 221
Query 627 CTCTCTTCTTGACAAATCTCCTAAGATTGA 656
|||||||||||| |||||||||||||||||
Sbjct 222 CTCTCTTCTTGAAAAATCTCCTAAGATTGA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5