BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891234
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36210.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 3264 0.0
> AT5G36210.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:14247913-14253295 REVERSE LENGTH=2505
Length=2505
Score = 3264 bits (1767), Expect = 0.0
Identities = 1945/2033 (96%), Gaps = 4/2033 (0%)
Strand=Plus/Plus
Query 1 ATGTCATCTTCTTCCCCCGACGATGCTCAGACTCCTCTAACCACCGCTCCTTATGGCTCC 60
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 186 ATGTCTTCTTCTTCCCCCGACGCTGCTCAGACTCCTCTAACCACCGCTCCTTATGGCTCC 245
Query 61 TGGAAATCTCCGATCACCGCAGACATCGTTTCCGGAGCTTCAAAGCGTCTCGGCGGCACC 120
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 246 TGGAAATCTCCAATCACCGCCGACATCGTTTCCGGAGCTTCAAAGCGTCTTGGCGGCACC 305
Query 121 GCCGTCGATTCTCGTGGCCGTCTCGTCTTACTCGAGTCTCGCCCTAACGAATCCGGGAGA 180
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 306 GCCGTCGATTCTCATGGCCGTCTCGTCTTGCTCGAGTCTCGCCCTAACGAATCCGGGAGA 365
Query 181 GGAGTTTTGGTGCTTCAAGGAGAAACACCAATTGATATTACTCCAAAAGACTTCGCTGTG 240
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 366 GGAGTTTTGGTGCTACAAGGAGAAACATCAATTGATATTACTCCAAAAGACTTCGCTGTG 425
Query 241 AGGACTCTAACACAAGAATACGGTGGTGGTGCTTTCCAGATTTCATCAGACGACACACTT 300
|| ||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 426 AGAACTTTAACACAAGAATACGGTGGTGGTGCTTTCCAGATTTCATCAGATGATACACTT 485
Query 301 GTTTTCTCTAATTACAAAGATCAGCGACTATACAAGCAACACATTACTGATAAAGATTCA 360
|| |||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 486 GTGTTCTCTAATTACAAGGATCAGCGATTGTACAAGCAAGACATTACTGATAAAGATTCA 545
Query 361 TCTCCGAAGCCAATTACTCCAGATTATGG-AGCACCAGCTGTTACTTATGCAGATGGAGT 419
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 546 TCTCCAAAGCCAATTACTCCAGATTATGGTA-CACCAGCTGTTACTTATGCAGATGGAGT 604
Query 420 CTTTGATTCACGCTTTAACCGTTACGTTGCTGTTAGGGAAGATGGTCGCGAGGATAGATC 479
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 605 CTTTGATTCACGCTTTAACCGTTATGTTACTGTTAGGGAAGATGGTCGCCAGGATAGATC 664
Query 480 AAACCCAATTACGACAATTGTGGAGGTTAATCTAAGTGGAGAGACACTTGAAGAACCAAA 539
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAACCCAATTACAACAATCGTGGAGGTTAATCTAAGTGGAGAGACACTTGAAGAACCAAA 724
Query 540 AGTACTAGTGAGTGGCAATGATTTCTATGCATTTCCACGTTTGGATCCCAAGTGTGAGCG 599
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 725 AGTACTCGTAAGTGGCAATGATTTCTATGCATTTCCACGGTTGGATCCCAAGTGTGAGCG 784
Query 600 ATTGGCATGGATTGAATGGAGTCACCCTAATATGCCTTGGGACAAAGCAGAGCTGTGGGT 659
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 785 ATTGGCATGGATTGAATGGAGTCACCCTAATATGCCATGGGATAAAGCAGAGCTGTGGGT 844
Query 660 TGGGTACATTTCAGAGGGCGGAAAGATTGATAAACGTGTATGTGTTGCTGGTTGTGATCC 719
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 845 TGGGTACATTTCCGAGGGCGGAAATATTGATAAGCGCGTATGTGTTGCTGGTTGTGATCC 904
Query 720 CAAATACGTCGAATCACCCACTGAGCCGAAGTGGTCATCAAGAGGGGAACTCTTTTTTGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CAAATACGTCGAATCACCCACTGAGCCGAAGTGGTCATCAAGAGGGGAACTCTTTTTTGT 964
Query 780 AACTGACAGAGAGAACGGATTTTGGAATATTCATAAATGGATCGAGAGTACCAATGAGGT 839
|||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 965 AACTGACAGAAAGAATGGATGTTGGAATATTCATAAATGGATTGAGAGTACCAATGAGGT 1024
Query 840 TGTTTCTGTATATCCTCTCG-CTGGTGAGTTTGCGAAACCACTATGGGTTTTCGGTACAA 898
|||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |
Sbjct 1025 TGTTTCTGTATATCCTCTCGAC-GGTGAGTTTGCGAAACCACTATGGATTTTCGGTACTA 1083
Query 899 ACTCCTACGAAATAATCGAGTGTTCTGAAGAGAAGAACATAATTGCATGCAGCTATAGGC 958
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 ACTCCTACGAGATAATCGAGTGTTCTGAAGAGAAGAACCTAATTGCATGCAGCTATAGGC 1143
Query 959 AGAAAGGGAAGTCATATCTAGGCATTGTGGATGATTCACAGGGTTCATGTTCTCTGCTTG 1018
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1144 AGAAAGGGAAGTCATATCTAGGCATTGTAGATGATTCACAGGGATCATGTTCTCTGCTCG 1203
Query 1019 ATATTCCTTTAACTGATTTTGACAGCATTACATTGGGAAATCAGTGCCTTTATGTGGAGG 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1204 ATATTCCTTTAACGGATTTTGACAGCATTACATTGGGAAATCAGTGCCTTTATGTTGAGG 1263
Query 1079 GAGCATCAGCAGTTCTTCCACCATCAGTTGCCAGGGTAACACTGGATCAGCATAAGATGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1264 GAGCATCAGCAGTTCTTCCACCATCAGTTGCCAGGGTAACACTGGATCAGCATAAGACGA 1323
Query 1139 AAGCACTCAGTTCTGAGATTGTTTGGTCTTCATCTCCCGATGTTTTGAAGTATGAGGCTT 1198
|||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct 1324 AAGCACTCAGTTCTGAGATTGTTTGGTCGTCGTCACCCGATGTTTTGAAGTACAAGGCTT 1383
Query 1199 TCTTCAGCGTGCCAGAGTTGATTGAATTTCCAACAGAGGTTCCTGGTCAGAACGCTTATG 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ACTTCAGCGTGCCAGAGTTGATTGAATTTCCAACAGAGGTTCCTGGTCAGAACGCTTATG 1443
Query 1259 CTTACTTTTACCCCCCAACCAATCCGTTCTACAATGCTAGCATGGAAGAGAAACCTCCGT 1318
| |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1444 CATACTTTTATCCTCCAACCAATCCGCTCTACAATGCTAGCATGGAAGAGAAACCTCCGT 1503
Query 1319 TGTTAGTGAAGAGTCACGGAGGACCTACTGCTGAATCACGTGGATCCTTAAATTTGAATA 1378
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1504 TGTTAGTGAAGAGTCATGGAGGACCTACTGCTGAATCACGTGGATCCTTAAATCTGAATA 1563
Query 1379 TCCAATACTGGACAAGTCGAGGGTGGGCATTTGTTGATGTCAATTATGGTGGAAGCACAG 1438
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1564 TCCAATACTGGACAAGTCGAGGTTGGGCATTTGTTGATGTCAATTATGGTGGAAGCACAG 1623
Query 1439 GTTATGGTCGAGAGTATCGAGAACGGTTGTTAAGGCGGTGGGGAATTGTTGACGTTGATG 1498
|||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||
Sbjct 1624 GTTATGGTCGAGAGTATCGAGAGCGGTTGTTAAGGCAGTGGGGAATAGTCGACGTTGATG 1683
Query 1499 ACTGTTGTGGCTGTGCTAAATATTTGGTATCTTCTGGCAAGGCAGATGTTAAGCGGCTCT 1558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1684 ACTGTTGTGGCTGTGCTAAATACTTGGTATCTTCTGGCAAGGCAGATGTTAAGCGGCTCT 1743
Query 1559 GTATATCTGGAGGTTCTGCAGGAGGCTACACAACTCTTGCAGCATTGGCGTTCAGGGATG 1618
|||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1744 GTATATCTGGCGGTTCTGCAGGAGGTTACACAACTCTTGCATCATTGGCGTTCAGGGATG 1803
Query 1619 TTTTCAAAGCTGGAGCGTCCTTATACGGAGTGGCTGATTTAAAAATGTTGAAGGAAGAAG 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1804 TTTTCAAAGCTGGAGCGTCCTTATACGGAGTGGCTGATTTAAAAATGTTGAAAGAAGAAG 1863
Query 1679 GTCATAAGTTTGAATCCCGTTATATCGACAATCTTGTTGGAGATGAAAAGGATTTCTATG 1738
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1864 GTCATAAATTTGAATCCCGTTATATCGACAATCTTGTTGGAGATGAAAAAGATTTCTATG 1923
Query 1739 AGAGATCACCAATCAATTTCGTCGATAAGTTCTCTTGCCCCATCATCCTTTTCCAAGGAT 1798
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1924 AGAGATCACCAATCAATTTCGTCGATAAGTTCTCTTGTCCCATCATCCTTTTCCAAGGAC 1983
Query 1799 TGGAAGACAAGGTTGTAACTCCAGATCAATCACGTAAAATCTATAAAGCATTAAAGGAAA 1858
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1984 TAGAAGACAAGGTTGTAACTCCAGATCAATCACGTAAAATCTATGAAGCATTAAAGAAAA 2043
Query 1859 AAGGTCTGCCTGTTGCTCTTGTTGAATATGAAGGAGAACAACACGGTTTTCGCAAGGCGG 1918
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 2044 AAGGTCTGCCTGTTGCTCTTGTCGAGTACGAAGGAGAACAACACGGTTTTCGCAAGGCGG 2103
Query 1919 AAAACATCAAATACACACTTGAGCAACAGATGGTGTTCTTTGCCCGAGTCGTTGGAGGGT 1978
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2104 AAAACATCAAATACACACTTGAGCAACAGATGGTGTTCTTTGCCCGAGTGGTTGGAGGGT 2163
Query 1979 TCAAAGTTGCAGATGACATCACTCCTTTGAGAATCGACAACTTCGACCCTTAG 2031
|||||||||| ||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 2164 TCAAAGTTGCTGATGACATCACTCCTTTGAAAATTGACAACTTCGACACTTAG 2216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100652092725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5