BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891237
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36240.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 351 3e-96
AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 274 6e-73
> AT5G36240.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr5:14277972-14278924 REVERSE LENGTH=765
Length=765
Score = 351 bits (190), Expect = 3e-96
Identities = 217/230 (94%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 1 ATGCCGAGACATAATGATGAAGCAGCAGAAGTATGTTTAAGATGTGGAGAATTTGGACAT 60
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 49 ATGCCGAGACATAATGATGATGAAGCAGAAGTATGTTTAAGATGTGGAGGATTTGGACAT 108
Query 61 GACATGACTTTGTGCAAGTATGAGTACTCTCAGGAAGATTTGAAGGATATCAAATGCTAT 120
|||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 109 GACATGACCTTGTGCAAGTATGAGTACTCTCATGAAGATTTGAAGAATATCAAATGCTAT 168
Query 121 GTCTGTAAAAGCTTAGGCCATTTATGTTGTATTGAACCTAGTCATTCACCGTCATGGACT 180
|||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 169 GTCTGTAATAGCTTAGGGCATTTATGTTGTATTGAACCTGGTCATACACAGTCATGGACT 228
Query 181 GTATCTTGCTACAGATGTGGTCAACTGGGTCATACTGGACTGGCATCGTG 230
|||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 229 GTATCTTGCTACAGATGTGGTCAACTAGGTCATACTGGACTGGCAT-GTG 277
Score = 235 bits (127), Expect = 3e-61
Identities = 212/250 (85%), Gaps = 18/250 (7%)
Strand=Plus/Plus
Query 271 CCTAATTCTTCAAGCGTGTGCTTTCCAGAAAACAGTAGTGAAGAAG--G--GTG--TTTT 324
||| ||||||| ||||| |||||| |||||||| ||| ||||||| | | | ||||
Sbjct 409 CCTGATTCTTCGAGCGTACGCTTTCAAGAAAACACTAGGGAAGAAGAAGAAGGGCATTTT 468
Query 325 GAGCATCAGGGCCCTAATTCTTCCAGTGTATGCTTTCAAGAAATCAGAAGGGAAGAAGGG 384
||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 469 GAGCATCAGTGCCCTGATTCTTCCAGTGTATGCTTTCAAGAAATCAGTAGGGAAGAAGGG 528
Query 385 TATTTGTCAAGTGAATGTCCGAATTCATCGGGCATAAGCAGCACTTTGCAGGGCAGAAAG 444
||| || | | | |||||||||| ||| || ||||||| |||||||| ||
Sbjct 529 --TTTATC---T-CA---CTGAATTCATCGAGCA-AA--AGCACTTCAAAGGGCAGAGAG 576
Query 445 ACTCGCCGGTTATGCTACGAATGTAAAGGAAAAGGACATATTGCTCGTGATTGCCCCAAT 504
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ACTCGCCGTTTATGCTACGAATGTAAAGGAAAAGGACATATTGCTCGTGATTGCCCCAAT 636
Query 505 TCCTCACAGG 514
||||||||||
Sbjct 637 TCCTCACAGG 646
> AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr3:15509621-15512574 FORWARD LENGTH=2107
Length=2107
Score = 274 bits (148), Expect = 6e-73
Identities = 184/201 (92%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 31 GTATGTTTAAGATGTGGAGAATTTGGACATGACATGACTTTGTGCAAGTATGAGTACTCT 90
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 835 GTATGTTTAAGATGTGGAGACTTTGGACATGACATGATTTTGTGCAAGTATGAGTACTCT 894
Query 91 CAGGAAGATTTGAAGGATATCA-AATGCTATGTCTGTAAAAGCTTAGGCCATTTATGTTG 149
||||||||||||||||| | | |||||||| ||||||||||||| |||||| |||| ||
Sbjct 895 AAGGAAGATTTGAAGGATGT-ACAATGCTATATCTGTAAAAGCTTTGGCCATCTATGCTG 953
Query 150 TATTGAACCTAGTCATTCACCGTCATGGACTGTATCTTGCTACAGATGTGGTCAACTGGG 209
| |||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 954 TGTTGAACCTGGTAATTCACTGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGG 1013
Query 210 TCATACTGGACTGGCATCGTG 230
||||| ||||||||||| |||
Sbjct 1014 TCATAGTGGACTGGCAT-GTG 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5