BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891239
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36260.1 | Symbols: | Eukaryotic aspartyl protease family p... 2187 0.0
AT1G05840.1 | Symbols: | Eukaryotic aspartyl protease family p... 111 1e-23
> AT5G36260.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:14284955-14288333 REVERSE LENGTH=1716
Length=1716
Score = 2187 bits (1184), Expect = 0.0
Identities = 1359/1444 (94%), Gaps = 9/1444 (1%)
Strand=Plus/Plus
Query 6 GACGATGGATCTAATTAGAATTTCACGCATTGTTGCGGTGGTTTT-GATGGTGGTGATCC 64
||||||||||| | |||||||||||||||||||||||||||||| | | |||||||||
Sbjct 163 GACGATGGATCCGAGTAGAATTTCACGCATTGTTGCGGTGGTTTTCG-TTTTGGTGATCC 221
Query 65 AAGTTGTTTCCGGGAATTTCGTATTTAATGTGACGCATAAGTTCGCCGGAAAAGAGAAAG 124
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 222 AAGTTGTTTCTGGGAATTTCGTGTTTAATGTGACGCATAAGTTCGCCGGAAAAGAGAAAC 281
Query 125 AATTGTCTGAGCTCAAATCTCACGATAGTTTTCGTCACGCTCGTATGCTTGCAAACATCG 184
||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||
Sbjct 282 AATTGTCTGAGCTCAAATCTCACGACAGCTTCCGTCACGCTCGTATGCTTGCGAATATCG 341
Query 185 ATCTTCCTCTCGGTGGCGATAGTCGCGCCGACTCCATCGGTTTATACTTCACCAAAATCA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 ATCTTCCTCTCGGTGGCGATAGTCGCGCCGACTCCATCGGTTTATACTTCACCAAAATCA 401
Query 245 AGCTTGGGTCACCACCAAAGGAATATTATGTTCAAGTTGATACTGGAAGTGACATACTTT 304
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 402 AGCTTGGGTCACCACCAAAGGAATATTATGTTCAAGTTGATACAGGAAGTGATATACTTT 461
Query 305 GGGTTAATTGTGCACCGTGTCCCAAGTGTCCTGTGAAAACTGATCTCGGTATACCATTAT 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 462 GGGTTAATTGTGCACCATGTCCCAAGTGTCCTGTGAAAACTGATCTCGGTATACCGTTAT 521
Query 365 CATTGTATGACTCTAAAGCTTCTTCGACTTCGAAGAACGTTGGATGTGAAGATGCTTTCT 424
|||| |||||||||||| |||||||||| |||||||| ||||| |||||||||| |||||
Sbjct 522 CATTATATGACTCTAAAACTTCTTCGACATCGAAGAATGTTGGCTGTGAAGATGATTTCT 581
Query 425 GTTCGTTTATAATGCAATCGGAGACTTGTGGGGCGAAGAAGCCATGTAGTTATCATGTAG 484
||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 582 GTTCGTTCATTATGCAATCCGAGACTTGTGGGGCAAAGAAGCCATGTAGTTATCATGTAG 641
Query 485 TGTATGGAGATGGAAGTACAAGTGATGGAGATTTTGTGAAGGATAACATTACTTTGGATC 544
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
Sbjct 642 TGTATGGAGATGGAAGTACAAGTGATGGAGATTTTATAAAGGATAACATTACTTTAGAAC 701
Query 545 AAGTGACTGGAAATCTTCGAACTGCACCCCTTGCGCAAGAAGTTGTATTTGGGTGTGGAA 604
|||||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||
Sbjct 702 AAGTGACTGGAAATCTTCGAACCGCGCCACTTGCGCAGGAAGTTGTATTCGGGTGTGGAA 761
Query 605 AAAATCAGTCTGGGCAGCTTGGACAAACTGAGTCAGCGGTTGATGGAATCATGGGCTTCG 664
|||||||||| ||||||||||||||||| || ||||||||||| || || ||||||||||
Sbjct 762 AAAATCAGTCAGGGCAGCTTGGACAAACCGACTCAGCGGTTGACGGTATTATGGGCTTCG 821
Query 665 GACAATCAAATACCTCCG-TCATTTCGCAACTAGCTGCCGGGGGGAGTGTGAAGAGAATA 723
|||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 822 GACAATCAAATACCTC-GATCATTTCGCAACTAGCTGCCGGGGGGAGTACAAAGAGAATA 880
Query 724 TTTTCACATTGCTTGGATAATATGAATGGAGGTGGAATTTTTGCTATTGGGGAAGTGGAA 783
||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 881 TTTTCACATTGTTTGGATAATATGAATGGAGGTGGGATTTTTGCTGTTGGTGAAGTGGAA 940
Query 784 TCTCCAGTAGTGAAAACAACTCCTTTGGTTCCTAATCAGGTACATTACAACGTCATTTTA 843
|| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 941 TCACCAGTAGTGAAAACAACTCCTATAGTTCCTAATCAGGTACATTACAATGTCATTTTA 1000
Query 844 AAGGGAATGGATGTGGATGGTGAACCTATTGACCTTCCACCAAGTCTAGCTAGTACTAAC 903
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1001 AAGGGAATGGATGTGGATGGTGACCCTATTGACCTTCCACCAAGTCTAGCTAGTACTAAC 1060
Query 904 GGTGATGGAGGAACGATAATCGATAGTGGTACAACTTTAGCATACTTACCACAGAATCTC 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1061 GGTGATGGAGGAACGATAATCGATAGTGGTACAACTTTAGCATACTTACCACAGAATTTG 1120
Query 964 TACAACTCACTAATTGAAAAGATTACTGCTAAACAACAGGTGAAACTACACATGGTACAG 1023
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TATAACTCACTAATCGAAAAGATTACTGCTAAACAACAGGTGAAACTACACATGGTACAG 1180
Query 1024 GAAACTTTTGCGTGTTTCAGTTTCACTTCAAACACAGATAAAGCGTTTCCGGTAGTCAAT 1083
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1181 GAAACTTTTGCCTGTTTCAGTTTCACTTCAAACACAGATAAAGCGTTTCCCGTGGTCAAT 1240
Query 1084 CTTCATTTCGAGGACTCACTGAAACTCTCTGTTTATCCGCATGACTATCTTTTCTCACTT 1143
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1241 CTTCATTTCGAAGACTCACTGAAACTGAGTGTGTATCCGCATGACTATCTTTTCTCACTT 1300
Query 1144 CGTGAAGATATGTATTGCTTTGGTTGGCAATCTGGTGGAATGACGACGCAGGACGGAGCC 1203
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1301 CGTGAAGACATGTATTGCTTTGGTTGGCAATCTGGTGGAATGACGACTCAGGACGGAGCT 1360
Query 1204 GATGTAATCCTTTTGGGAGATTTGGTGCTTTCAAACAAGTTAGTAGTATACGATCTGGAG 1263
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1361 GATGTAATCCTTTTGGGAGATTTGGTGCTTTCAAACAAGTTAGTAGTATACGATTTGGAG 1420
Query 1264 AATGAGGTCATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTGAAAGATGGA 1323
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1421 AATGAGGTCATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTCAAAGATGGA 1480
Query 1324 TCGGGAGCGGCTTACTCA-CTCGGAGCAGATAATCTCATATCGGC---TTCTTCAGTGAT 1379
|| |||||||||||| || ||||||||||| |||||||||||||| |||||| || ||
Sbjct 1481 TCAGGAGCGGCTTAC-CAACTCGGAGCAGAAAATCTCATATCGGCGGCTTCTTCGGTTAT 1539
Query 1380 GAACGGAACACTTGTAACGTTATTGTCGATACTAATTTGGGTTTTCCATTCTTTTACTTC 1439
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1540 GAACGGAACACTTGTAACGTTATTGTCCATACTAATTTGGGTTTTCCATTCTTTTACTTC 1599
Query 1440 ATAG 1443
||||
Sbjct 1600 ATAG 1603
> AT1G05840.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:1762734-1766281 REVERSE LENGTH=1698
Length=1698
Score = 111 bits (60), Expect = 1e-23
Identities = 164/212 (77%), Gaps = 15/212 (7%)
Strand=Plus/Plus
Query 1114 GTTTATCCGCATGACTATCTTTTCTCACTTCGTGAA-GATATGTATTGCTTTGGTTGGCA 1172
|||||||| ||||||||||| ||| | | || |||| || |||| ||| ||||||||||
Sbjct 1266 GTTTATCCTCATGACTATCTGTTC-C-C-TCATGAAGGA-ATGTGGTGCATTGGTTGGCA 1321
Query 1173 ATCTGGTGGAATGACGA-CGCAG-GA-CGGAGCCGATGTAATC-CTTTTGGGAGATTTGG 1228
| | | | |||| | | | ||| || |||| | | | | ||||||||||||||||
Sbjct 1322 AAATAGCGCAATG-CAATC-CAGAGATAGGAG-AAACATGA-CACTTTTGGGAGATTTGG 1377
Query 1229 TGCTTTCAAACAAG-TTAGTAGTATACGATCTGGAGAATGAGGTCATTGGATGGGCTGAC 1287
|||||||||||||| || || | |||||||| || ||| || ||||||| ||| ||||
Sbjct 1378 TGCTTTCAAACAAGCTT-GTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTGAA 1436
Query 1288 CACAACTGTTCGTCAAGCATCAAAGTGAAAGA 1319
||||||| || |||||||| ||||| |||||
Sbjct 1437 TACAACTGCTCATCAAGCATAAAAGTAAAAGA 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5