BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891248 Length=861 Score E Sequences producing significant alignments: (Bits) Value AT3G42550.1 | Symbols: | Eukaryotic aspartyl protease family p... 514 6e-145 AT5G36297.1 | Symbols: | pseudogene of aspartyl protease famil... 191 1e-47 > AT3G42550.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr3:14665728-14669135 REVERSE LENGTH=1293 Length=1293 Score = 514 bits (278), Expect = 6e-145 Identities = 444/521 (85%), Gaps = 23/521 (4%) Strand=Plus/Plus Query 28 AGGTTGATCATCGTTGCCATCTTTGTTATGGTATGGGGATACGAGTACGAGGGGACGGTT 87 ||||||||||||| |||||||||||| |||||||| || | ||||||| ||||||| Sbjct 19 AGGTTGATCATCGCTGCCATCTTTGTCATGGTATGCGG---C---TACGAGGCGACGGTT 72 Query 88 CGTCCATTGAAGAGGATGATTCCGCCGAGCCATGAACTCGATCTTACTCAGCTTGGGGCA 147 | ||| |||||||||||||||||||||||||||||||||| || ||||||||| | || Sbjct 73 CTTCCGCTGAAGAGGATGATTCCGCCGAGCCATGAACTCGACCTCACTCAGCTTATGACA 132 Query 148 TTTGATTCTGCTCGGCATGGAAGGATGTTACAGTCTCATGTCCATGGAGCCTTCAGTTTT 207 |||||||||||||||||||||||| |||||||||||| ||| || ||| | |||| | Sbjct 133 TTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACTGG 192 Query 208 CCGGTTGAAAGAGGCAC-A-AATCCGATT-TC-CAG-GATTTACTACACGACATTACAAA 262 |||||||||| ||| | || | || || ||| | |||||||||| ||| |||||| Sbjct 193 AAAGTTGAAAGAGACACTAGTATAC--TTCTCTCAGCGCTTTACTACACAACAGTACAAA 250 Query 263 TTGGGACACCGCCAAGAGAGTTCAATGTGGTAATTGACACCGGAAGTGATGTTTTATGGG 322 |||||||||| ||||||||||| |||||||||||||||| ||||||||| || |||||| Sbjct 251 TTGGGACACCTCCAAGAGAGTTGGATGTGGTAATTGACACGGGAAGTGATCTTGTATGGG 310 Query 323 TTAGCTGCATTTCTTGCGTCGGTTGCCCTCTTCAGAATGTTACTTTCTTTGATCCTGGAG 382 ||||||||| ||| |||||||| ||||| || || |||||||||||||| |||||||||| Sbjct 311 TTAGCTGCAATTCCTGCGTCGGCTGCCCGCTCCATAATGTTACTTTCTTCGATCCTGGAG 370 Query 383 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTTCTCGGATCTACATA 442 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 371 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTCCTCGGATCTACAGA 430 Query 443 AGAAATCTGGTTGTTCTCCACTTGA--GT---AC--A-A-GGTGGAGTACAGTGATGGAA 493 ||||||| ||||||| | |||||| || || | | |||||||||| ||||||||| Sbjct 431 AGAAATCCCGTTGTTCGCTACTTGAAAGTTGTACCTACAAGGTGGAGTACGGTGATGGAA 490 Query 494 GTTTCACCTCCGGCTACTACATCTCAGATCTCATTTCCTTT 534 || | ||||||||||||||||| |||||||||||||| ||| Sbjct 491 GTGTAACCTCCGGCTACTACATATCAGATCTCATTTC-TTT 530 > AT5G36297.1 | Symbols: | pseudogene of aspartyl protease family protein | chr5:14315808-14316053 FORWARD LENGTH=246 Length=246 Score = 191 bits (103), Expect = 1e-47 Identities = 166/195 (85%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 28 AGGTTGATCATCGTTGCCATCTTTGTTATGGTATGGGGATACGAGTACGAGGGGACGGTT 87 |||||||| |||| |||||||||||| |||||||| || | ||||||| ||||||| Sbjct 13 AGGTTGATTATCGCTGCCATCTTTGTCATGGTATGCGG---C---TACGAGGCGACGGTT 66 Query 88 C-GTC-CATTGAAGAGGATGATTCCGCCGAGCCATGAACTCGATCTTACTCAGCTTGGGG 145 | || | || ||||||||||||| |||||||||||||||||| || ||||||||| || Sbjct 67 CTTTCGC-TT-AAGAGGATGATTCTGCCGAGCCATGAACTCGACCTCACTCAGCTTATGG 124 Query 146 CATTTGATTCTGCTCGGCATGGAAGGATGTTACAGTCTCATGTCCATGGAGCCTTCAGTT 205 |||||||||||||||||||||||||| |||||||||||| ||| || ||| | |||| | Sbjct 125 CATTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACT 184 Query 206 TTCCGGTTGAAAGAG 220 ||||||||||||||| Sbjct 185 TTCCGGTTGAAAGAG 199 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41995746892 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5