BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891248
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42550.1 | Symbols: | Eukaryotic aspartyl protease family p... 514 6e-145
AT5G36297.1 | Symbols: | pseudogene of aspartyl protease famil... 191 1e-47
> AT3G42550.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:14665728-14669135 REVERSE LENGTH=1293
Length=1293
Score = 514 bits (278), Expect = 6e-145
Identities = 444/521 (85%), Gaps = 23/521 (4%)
Strand=Plus/Plus
Query 28 AGGTTGATCATCGTTGCCATCTTTGTTATGGTATGGGGATACGAGTACGAGGGGACGGTT 87
||||||||||||| |||||||||||| |||||||| || | ||||||| |||||||
Sbjct 19 AGGTTGATCATCGCTGCCATCTTTGTCATGGTATGCGG---C---TACGAGGCGACGGTT 72
Query 88 CGTCCATTGAAGAGGATGATTCCGCCGAGCCATGAACTCGATCTTACTCAGCTTGGGGCA 147
| ||| |||||||||||||||||||||||||||||||||| || ||||||||| | ||
Sbjct 73 CTTCCGCTGAAGAGGATGATTCCGCCGAGCCATGAACTCGACCTCACTCAGCTTATGACA 132
Query 148 TTTGATTCTGCTCGGCATGGAAGGATGTTACAGTCTCATGTCCATGGAGCCTTCAGTTTT 207
|||||||||||||||||||||||| |||||||||||| ||| || ||| | |||| |
Sbjct 133 TTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACTGG 192
Query 208 CCGGTTGAAAGAGGCAC-A-AATCCGATT-TC-CAG-GATTTACTACACGACATTACAAA 262
|||||||||| ||| | || | || || ||| | |||||||||| ||| ||||||
Sbjct 193 AAAGTTGAAAGAGACACTAGTATAC--TTCTCTCAGCGCTTTACTACACAACAGTACAAA 250
Query 263 TTGGGACACCGCCAAGAGAGTTCAATGTGGTAATTGACACCGGAAGTGATGTTTTATGGG 322
|||||||||| ||||||||||| |||||||||||||||| ||||||||| || ||||||
Sbjct 251 TTGGGACACCTCCAAGAGAGTTGGATGTGGTAATTGACACGGGAAGTGATCTTGTATGGG 310
Query 323 TTAGCTGCATTTCTTGCGTCGGTTGCCCTCTTCAGAATGTTACTTTCTTTGATCCTGGAG 382
||||||||| ||| |||||||| ||||| || || |||||||||||||| ||||||||||
Sbjct 311 TTAGCTGCAATTCCTGCGTCGGCTGCCCGCTCCATAATGTTACTTTCTTCGATCCTGGAG 370
Query 383 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTTCTCGGATCTACATA 442
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 371 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTCCTCGGATCTACAGA 430
Query 443 AGAAATCTGGTTGTTCTCCACTTGA--GT---AC--A-A-GGTGGAGTACAGTGATGGAA 493
||||||| ||||||| | |||||| || || | | |||||||||| |||||||||
Sbjct 431 AGAAATCCCGTTGTTCGCTACTTGAAAGTTGTACCTACAAGGTGGAGTACGGTGATGGAA 490
Query 494 GTTTCACCTCCGGCTACTACATCTCAGATCTCATTTCCTTT 534
|| | ||||||||||||||||| |||||||||||||| |||
Sbjct 491 GTGTAACCTCCGGCTACTACATATCAGATCTCATTTC-TTT 530
> AT5G36297.1 | Symbols: | pseudogene of aspartyl protease family
protein | chr5:14315808-14316053 FORWARD LENGTH=246
Length=246
Score = 191 bits (103), Expect = 1e-47
Identities = 166/195 (85%), Gaps = 10/195 (5%)
Strand=Plus/Plus
Query 28 AGGTTGATCATCGTTGCCATCTTTGTTATGGTATGGGGATACGAGTACGAGGGGACGGTT 87
|||||||| |||| |||||||||||| |||||||| || | ||||||| |||||||
Sbjct 13 AGGTTGATTATCGCTGCCATCTTTGTCATGGTATGCGG---C---TACGAGGCGACGGTT 66
Query 88 C-GTC-CATTGAAGAGGATGATTCCGCCGAGCCATGAACTCGATCTTACTCAGCTTGGGG 145
| || | || ||||||||||||| |||||||||||||||||| || ||||||||| ||
Sbjct 67 CTTTCGC-TT-AAGAGGATGATTCTGCCGAGCCATGAACTCGACCTCACTCAGCTTATGG 124
Query 146 CATTTGATTCTGCTCGGCATGGAAGGATGTTACAGTCTCATGTCCATGGAGCCTTCAGTT 205
|||||||||||||||||||||||||| |||||||||||| ||| || ||| | |||| |
Sbjct 125 CATTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACT 184
Query 206 TTCCGGTTGAAAGAG 220
|||||||||||||||
Sbjct 185 TTCCGGTTGAAAGAG 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5