BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891256

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla...   527    6e-149
  AT3G02530.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   185    4e-46 
  AT5G16070.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   159    2e-38 
  AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:1...   117    1e-25 


> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate 
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179

 Score =  527 bits (285),  Expect = 6e-149
 Identities = 346/376 (92%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  4    TACCTAAAACGATC-CCGTCCTCCTCCCTCCAACCCGACGGAGTTACCGAGGACGTCGTC  62
            ||||| |||||| | |||||||||||||||| |||||||||| |||||||| || |  ||
Sbjct  189  TACCTTAAACGA-CGCCGTCCTCCTCCCTCCGACCCGACGGACTTACCGAGAACTTTTTC  247

Query  63   ACAGACAAATCTCTTCTCTCGTGGAAACTCGATCGGACGAGTTCGAGTCTCCTCTCGAGC  122
            || ||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct  248  ACGGACTAATCTCTTCTCTCGCGGGAACTCGATCGGACGAGTTCGAGTCTCCTCCCGAGC  307

Query  123  TGTTCCTCTGGCGAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAGAC  182
             |||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  308  AGTTCCTGTAGCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAAAC  367

Query  183  GGATCCGTACGATCGGATTAAGAACACGGACGGGATTATTCAGCTTGGATTAGCTGAGAG  242
            |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct  368  GGATCCGTACGATCGGATTACGAACACGGATGGGATTATTCAGCTTGGATTAGCCGAGAG  427

Query  243  TACACTGTGCTTTGACTTGCTACAGAGATGGATGTCTGAGAATTTGATGGAGTCGATGAT  302
            ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  428  TACGCTGTGCTTTGACTTGCTACAGAGATGGATGTCAGAGAATTTGATGGAGTCAATGAT  487

Query  303  GCAATCTGATGATGGTAAATTCGATATTAGTAGTATCGCAATGTATAAACCTATTGAAGG  362
            |||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||
Sbjct  488  GCAATCTGATGATGGTGAATTTGATATTAGTAGTATCGCCATGTATAAACCTTTTGAAGG  547

Query  363  ATTACTGGAACTCAGA  378
            |||||| |||||||||
Sbjct  548  ATTACTTGAACTCAGA  563


> AT3G02530.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr3:528574-532582 REVERSE LENGTH=1965
Length=1965

 Score =  185 bits (100),  Expect = 4e-46
 Identities = 110/115 (96%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  433   ATAATCGCTCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGT  492
             |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1062  ATAATCGCCCTTAGAAGGGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGT  1121

Query  493   GGAGAAGCTGTGAACTCTGTTGATGACTTGACCCCTGATTCTCTTTGTTGGGCTG  547
             |||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct  1122  GGAGAAGCTGTGAACTCTGTCGATGACTTGACCCCTGATTGTCTTGGTTGGGCTG  1176


> AT5G16070.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr5:5247354-5251179 REVERSE LENGTH=1932
Length=1932

 Score =  159 bits (86),  Expect = 2e-38
 Identities = 100/107 (93%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  441   TCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGTGGAGAAGC  500
             |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  1071  TCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTAGTTTTGGCCTGTGGTGGAGAAGC  1130

Query  501   TGTGAACTCTGTTGATGACTTGACCCCTGATTCTCTTTGTTGGGCTG  547
             |||||| |||||||| |||||||||||||| |||||| | |||||||
Sbjct  1131  TGTGAATTCTGTTGACGACTTGACCCCTGAGTCTCTTGGATGGGCTG  1177


> AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:1618602-1623452 
REVERSE LENGTH=4600
Length=4600

 Score =  117 bits (63),  Expect = 1e-25
 Identities = 79/86 (92%), Gaps = 4/86 (5%)
 Strand=Plus/Plus

Query  547   GAGAAAGCAAAAG----ACAAGCACCTAAAATGCCATCAAGACCTGAAATCCAGAATTCA  602
             |||||||||||||    ||||| |||| |||||||||||| |||||||||||||||||||
Sbjct  1726  GAGAAAGCAAAAGAAATACAAGTACCTGAAATGCCATCAATACCTGAAATCCAGAATTCA  1785

Query  603   GAGAAAGCAAAAGAGGTCCAAGCCAA  628
             ||||||||||||||||||||||||||
Sbjct  1786  GAGAAAGCAAAAGAGGTCCAAGCCAA  1811



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33707112637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5