BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891275 Length=405 Score E Sequences producing significant alignments: (Bits) Value AT5G36910.1 | Symbols: THI2.2 | thionin 2.2 | chr5:14561817-145... 399 7e-111 > AT5G36910.1 | Symbols: THI2.2 | thionin 2.2 | chr5:14561817-14562750 REVERSE LENGTH=718 Length=718 Score = 399 bits (216), Expect = 7e-111 Identities = 351/414 (85%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 1 ATGGAAGGAAAAACAGTGATCTCAAGTCTGCTCATAATGAGGCTTGTCTTGA-CAAAGAT 59 |||||||| ||||| |||||||||||||||||||||||||| |||||||| | || |||| Sbjct 78 ATGGAAGGCAAAACTGTGATCTCAAGTCTGCTCATAATGAGTCTTGTCTT-AGCACAGAT 136 Query 60 TCAAGTAGAAGCaaaaaaaCTCTGCTGTCCTAACC-A-GACTGCTAGATCTAAATATCTA 117 |||||||||||| ||||| ||||||||||| ||| | || || ||||||| ||| | Sbjct 137 TCAAGTAGAAGC--AAAAA-TCTGCTGTCCT-ACCAAGGA-TGATAGATCTGTGTAT-TT 190 Query 118 T-TATGCAT--TAGGAG-GCCATCCCCAGAACATTGTCTAGCATTGAGTACATGCAAAAT 173 | ||||||| | | | |||||| | |||||||| | ||||| |||||||| Sbjct 191 TGTATGCATGCTTTCCGTGTCATCCCAATTTTATTGTCTATTAAAGAGTAAATGCAAAAA 250 Query 174 TATTTCTGGGAATATATGTCCTCCGGGATATACAAATGACATTCAT-GAAAATTCTGGTG 232 || ||| || |||||||||||||||||||| |||||||||| | ||||||||||||| Sbjct 251 TACATCTCAGACGATATGTCCTCCGGGATATACTAATGACATTC-TCGAAAATTCTGGTG 309 Query 233 ATGCTGTCAATGAATATTGCGAGTTGGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACTA 292 |||||||||||||||||||| || | |||||||||||||||||||||||||||||||| | Sbjct 310 ATGCTGTCAATGAATATTGCAAGCTAGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACCA 369 Query 293 CTCTCCAAAACTCGGACGCAAGTAAAGCT-TTGAGTGAAGCGGTTGAACTATGCGCCAAG 351 |||||||||||| ||| ||||||||| | ||||||||||||||||||| |||| ||||| Sbjct 370 CTCTCCAAAACTTTGACACAAGTAAAG-TATTGAGTGAAGCGGTTGAACAATGCACCAAG 428 Query 352 GCATGTTCTACTGTCTGCACCGGAGGATCTACGGCCGCAATTAAAAGTGCTTAA 405 ||||||||| |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 429 GCATGTTCTTCTGTCTGCACCGGAGGATCTACCGCCGCAGTTAAAAGTGCCTAA 482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19152012369 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5