BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891275

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36910.1 | Symbols: THI2.2 | thionin 2.2 | chr5:14561817-145...   399    7e-111


> AT5G36910.1 | Symbols: THI2.2 | thionin 2.2 | chr5:14561817-14562750 
REVERSE LENGTH=718
Length=718

 Score =  399 bits (216),  Expect = 7e-111
 Identities = 351/414 (85%), Gaps = 18/414 (4%)
 Strand=Plus/Plus

Query  1    ATGGAAGGAAAAACAGTGATCTCAAGTCTGCTCATAATGAGGCTTGTCTTGA-CAAAGAT  59
            |||||||| ||||| |||||||||||||||||||||||||| |||||||| | || ||||
Sbjct  78   ATGGAAGGCAAAACTGTGATCTCAAGTCTGCTCATAATGAGTCTTGTCTT-AGCACAGAT  136

Query  60   TCAAGTAGAAGCaaaaaaaCTCTGCTGTCCTAACC-A-GACTGCTAGATCTAAATATCTA  117
            ||||||||||||  ||||| ||||||||||| ||| | || || |||||||   ||| | 
Sbjct  137  TCAAGTAGAAGC--AAAAA-TCTGCTGTCCT-ACCAAGGA-TGATAGATCTGTGTAT-TT  190

Query  118  T-TATGCAT--TAGGAG-GCCATCCCCAGAACATTGTCTAGCATTGAGTACATGCAAAAT  173
            | |||||||  |    | | |||||| |    ||||||||  |  ||||| |||||||| 
Sbjct  191  TGTATGCATGCTTTCCGTGTCATCCCAATTTTATTGTCTATTAAAGAGTAAATGCAAAAA  250

Query  174  TATTTCTGGGAATATATGTCCTCCGGGATATACAAATGACATTCAT-GAAAATTCTGGTG  232
            ||  |||  ||  |||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct  251  TACATCTCAGACGATATGTCCTCCGGGATATACTAATGACATTC-TCGAAAATTCTGGTG  309

Query  233  ATGCTGTCAATGAATATTGCGAGTTGGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACTA  292
            |||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
Sbjct  310  ATGCTGTCAATGAATATTGCAAGCTAGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACCA  369

Query  293  CTCTCCAAAACTCGGACGCAAGTAAAGCT-TTGAGTGAAGCGGTTGAACTATGCGCCAAG  351
            ||||||||||||  ||| ||||||||| | ||||||||||||||||||| |||| |||||
Sbjct  370  CTCTCCAAAACTTTGACACAAGTAAAG-TATTGAGTGAAGCGGTTGAACAATGCACCAAG  428

Query  352  GCATGTTCTACTGTCTGCACCGGAGGATCTACGGCCGCAATTAAAAGTGCTTAA  405
            ||||||||| |||||||||||||||||||||| |||||| |||||||||| |||
Sbjct  429  GCATGTTCTTCTGTCTGCACCGGAGGATCTACCGCCGCAGTTAAAAGTGCCTAA  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5