BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891277
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 375 7e-104
AT5G36925.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 161 2e-39
> AT5G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G36925.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14564392-14564971
REVERSE LENGTH=249
Length=249
Score = 375 bits (203), Expect = 7e-104
Identities = 235/250 (94%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGAAGAAGACATCACATGTTCTTCTGCTAAGTCTTCTGCTTTGCCTGATGTTT 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGAAGAATACATCACATGTTCTTTTGCTAAGTCTTCTGCTTTGCCTGATGTTT 60
Query 61 GTGATTGGTCTTGTAGAAGCTAGTATTCCAGGTGGCGATATGGGTCCAGAAATATATACT 120
|||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||
Sbjct 61 GTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGATATGGGTCCAGCAATATATACT 120
Query 121 CCACCATCAGGATCATGTGGAGCTCCTATTGCCAAATATGATTCCCAAGTACTACTAACC 180
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||
Sbjct 121 CCACCATCAGGATCATGTGGAGCTCCTATTTCCAAATATGATTTCCAAG---TACTAGCC 177
Query 181 AAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAAGATGTGACCTACACC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 178 AAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAAGATGTGACCCATACT 237
Query 241 ACACGACCTT 250
||||||||||
Sbjct 238 ACACGACCTT 247
> AT5G36925.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G36920.1);
Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:14565813-14566244
REVERSE LENGTH=347
Length=347
Score = 161 bits (87), Expect = 2e-39
Identities = 165/199 (83%), Gaps = 20/199 (10%)
Strand=Plus/Plus
Query 53 TGATGTTTGTGATTGGTCTTGTAGAAGCTAGTATTCCAGGTGGC-GATATGGGTCCAGAA 111
||||||||||||||||| ||||||||||||| | || | | |||| |||||| ||
Sbjct 4 TGATGTTTGTGATTGGTTTTGTAGAAGCTAG-A----AGAT--CAGATACGGGTCCGGAT 56
Query 112 ATATA-TACTCCACCATCAGGATCATGTGGAGCTCCTATTGCCA-AATATGA-TTC--C- 165
||| | |||||||||||||||||||||||||||| | ||||| | ||| | | ||| |
Sbjct 57 ATA-AGTACTCCACCATCAGGATCATGTGGAGCTTCAATTGC-AGAAT-TCAATTCATCA 113
Query 166 CAAGTACTACTAACCAAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAA 225
||| | ||||| |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 114 CAA--A-TACTAGCCAAGAGAGCACCACCATGTAGACGTCCTCGACTCCAAAACTCAGAA 170
Query 226 GATGTGACCTACACCACAC 244
||||||||| |||| ||||
Sbjct 171 GATGTGACCCACACTACAC 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5