BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891284

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36960.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   542    1e-153


> AT5G36960.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:14598693-14599988 
FORWARD LENGTH=725
Length=725

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 375/413 (91%), Gaps = 11/413 (3%)
 Strand=Plus/Plus

Query  10   TCGTCGTCGTGGGAGATGCAACTAATGGAAACGGCTAAAGAGGAGCTGGAGATTCTTCAG  69
            |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct  62   TCGTCGTCGTGGGAGATGCAACTAGTGGAAACGGCTAAAGAGGAACTCGAGATTCTTCAG  121

Query  70   TCTCAATATCCAAACCGCTTTGCGTACCTTAAATCCGATCTTCAATCTTTCATTTCTCAC  129
            ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  122  TCTCAATATCCCAACCGCTTCGCTTACCTCAAATCCGATCTTCAATCTTTCATTTCTCAC  181

Query  130  CTCCGTGAAGATCACGCGCCGCCGCGtccctcctcctcctcctcctcctcctcTGTCGTT  189
            |||||||||||||||||||||||||||   |  |  | |  | |||||||||| || || 
Sbjct  182  CTCCGTGAAGATCACGCGCCGCCGCGT---T--T-AT-C-AC-CCTCCTCCTCCGTAGTC  232

Query  190  CTTACTCAAGAGTCATCAAATTGTAAGAATAAGCAAAAACATAAGAAGAGAAAAAGCGTC  249
            || |||||||||||||||||||||||  |||||||||||||||||||||||||  |||||
Sbjct  233  CTCACTCAAGAGTCATCAAATTGTAACTATAAGCAAAAACATAAGAAGAGAAAGTGCGTC  292

Query  250  ATGGACAATTTTGGGGATCAAGCATCGTCATCAACAATTGGAAAGATCCACAAGAACAAT  309
            ||||||||||| || ||||||||||| || |||||||  ||||||||||| |||||||||
Sbjct  293  ATGGACAATTTAGGAGATCAAGCATCATCGTCAACAACGGGAAAGATCCATAAGAACAAT  352

Query  310  AACAAGATAGGTCAGAGAGTGGTCACCG-AGAGAAAAAATAGAGTTGAAATGGTTCTTGA  368
            |||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct  353  AACAAGATGGGTCAGAGAGTGGTCA-CGAAGAAAAAAAATAGAGTTGAAATGGTTCTTGA  411

Query  369  GAGGGCTCAACTTTGTCTCCAGAAGATAAGAGACGTGAAAGCCTCTTTGTGTT  421
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  412  GAGGGCTCAACTTTGTCTCCAAAAGATAAGAGACGTGAAAGCCTCTTTGTGTT  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5