BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891288
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 773 0.0
AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 388 2e-107
> AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:5213081-5215620 FORWARD LENGTH=2540
Length=2540
Score = 773 bits (418), Expect = 0.0
Identities = 458/478 (96%), Gaps = 0/478 (0%)
Strand=Plus/Plus
Query 4 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAATTATAACATG 63
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 615 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATG 674
Query 64 ATGCTGCGTATTCTGGGTGTTAATGGACTTGTCGATGAGTTTTGGGGGTTGGTTGATGTG 123
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 675 ATGCTGCGGATTCTGGGTGGTAATGGACTTGTTGATGAGTTTTGGGGGTTGGTTGATGTG 734
Query 124 ATGAAGAAGAAAGGACATGGCTTATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTT 183
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 735 ATGAAGAAGAAAGGGCATGGTTTATCGGCTAATGTTAGAGATAAAGTGGGTGACAAATTT 794
Query 184 CAGAAAGATGGGCTGGAGAGTGATTTGGTGAGGCTGAGAAAGCTTTTTGCTTCAGATTGT 243
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 795 CAGAAAGATGGGCTGGAGAGTGATTTGCTGAGGCTGAGAAAGCTTTTTACTTCAGATTGT 854
Query 244 TTAGATAATTCGGCGGAGAATGTTTGTGATAGGGTGTGTAAGATTGTGATGAAGGAAGAG 303
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 855 TTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAA 914
Query 304 TGTGGCGATGATGTGGAGAAACGGGTGAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 363
|| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 915 TGGGGTGATGATGTAGAGAAACGGGTAAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 974
Query 364 GTGAAGATGATTGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGG 423
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 975 GTGAAGATGATTGTGGAACGTCTTGATGTTGAACCCAGGAAAGCTTTGTTGTTCTTCCGG 1034
Query 424 TGGATTGATGAGTCTGGTCTCTTTAAGCATGATGAGAAAACTTATAATGCTATGGCTA 481
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1035 TGGATTGATGAGTCTGATCTCTTTAAGCATGATGAGAAAACCTATAATGCTATGGCTA 1092
> AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:513525-515925 FORWARD LENGTH=2401
Length=2401
Score = 388 bits (210), Expect = 2e-107
Identities = 383/466 (82%), Gaps = 14/466 (3%)
Strand=Plus/Plus
Query 21 GGAGGCTTCTCCTGAGGAACTTAGC-TCGAAGAATTATAACATGATGCTGCGTATTCTGG 79
|||||||| |||| | ||||| | || |||| |||||||| ||||||||||||| | |
Sbjct 487 GGAGGCTTATCCTCAAAAACTT-TCTTCCAAGAGTTATAACACGATGCTGCGTATTTTTG 545
Query 80 GTGTTAATGGACTT-GTCGATGAGTTTTGGGGGTTGGTTGATG-TGATGAAGAAGAAAGG 137
||||||||||| || || |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 546 GTGTTAATGGA-TTAGTTGATGAGTTTTGGAGGTTGGTTGATGAT-ATGAAGAAGAAAGG 603
Query 138 ACATGGCT-TATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTTCAGAAAGATGGGC 196
||||| | | || ||||||||||| || | ||| ||||| || ||| |||||||||| |
Sbjct 604 GCATGG-TGTTTCAGCTAATGTTAGGGACAGAGTCGGTGACAAGTTTAAGAAAGATGGAC 662
Query 197 TGGAGAGTGATTTGGTGAGGCTGAGAA-AGCTTTTTGCTTCAGATTGTTTAGATAATTCG 255
| || | |||||||| |||||||| || |||| |||||||||| || | | ||||| ||
Sbjct 663 TAGAAAATGATTTGGAGAGGCTGA-AAGAGCTATTTGCTTCAGGTTCTATGGATAACTCT 721
Query 256 GCGGAGAATGTTTGTGATAGGGTGTGTAAGATTGTGATGAAGGAAGAGTGTGGCGATGAT 315
| || || ||||| |||||||||||||||||||||||||||||| ||| || | ||||
Sbjct 722 GTTGACAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTGTGGGGTGCTGAT 781
Query 316 GTGGAGAAACGGGTGAGAGATTTGAATGTT-GAGTTTAAGAGTGATTTAGTGAAGATGAT 374
|| ||||||| | | || |||||||| | | |||||||| |||||| | || |||||| |
Sbjct 782 GTAGAGAAACAGCTAAGGGATTTGAA-GCTCGAGTTTAAAAGTGATGTGGTAAAGATGGT 840
Query 375 TGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGGTGGATTGATGA 434
| |||||| ||||| || || || |||||||||||||||||||| |||||||||||||
Sbjct 841 TTTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTGTTGTTCTTTAGGTGGATTGATGA 900
Query 435 GTCTGGTC-TCTTTAAGCATGATGAGAAAACTTATAATGCTATGGC 479
|||||| | ||||| ||||||||||| || ||||||||||||||
Sbjct 901 GTCTGGAAGT-TTTAAACATGATGAGAAGACGTATAATGCTATGGC 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5