BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891298
Length=3666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 758 0.0
AT5G38344.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 355 2e-96
AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 324 4e-87
> AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946
Score = 758 bits (410), Expect = 0.0
Identities = 774/944 (82%), Gaps = 47/944 (5%)
Strand=Plus/Plus
Query 12 GTTCAAAGGAAAGGGAATCGACTCATTTATTGATAATGA-TATCGAGAGGACCAAGTCAA 70
||||| |||||||||||| ||| |||||||||||||| | ||||||||||| |||||||
Sbjct 225 GTTCAGAGGAAAGGGAATTGACCCATTTATTGATAAT-AGTATCGAGAGGAGTAAGTCAA 283
Query 71 TCGGTCCTGAGCTCAAAGAAGCTATCCGAGGATCGAA-GATCGCGATCGTCTTGCTTTCG 129
|||||||||||||| |||||||||| ||||||| || ||| ||||| |||||||| |||
Sbjct 284 TCGGTCCTGAGCTCGTAGAAGCTATCAGAGGATC-AAGGATTGCGATTGTCTTGCTCTCG 342
Query 130 AGAAACTATGCTTCTTCGTCATGGTGCTTAAACGAGTTGATGGAGATCATGAATTGCAGG 189
|| ||||||||||||||||| |||||| | ||||||||| ||||||| ||||| |||| |
Sbjct 343 AGGAACTATGCTTCTTCGTCGTGGTGCATGAACGAGTTGGTGGAGATTATGAAGTGCAAG 402
Query 190 GAGGATTTGGGTCAAATAGTAATGACCATTTTCTATGAAGTAGATCCAACAGATGTAAAG 249
|| || |||||||||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct 403 GAAGACTTGGGTCAAATAGTGATAACCATTTTCTATGAAGTTGATCCAACTCATATAAAG 462
Query 250 AAACAAACCGGAGATTTTGGGAAGGCCTTCaaaaaaaCTTGTAAAGGT---GC-CATG-A 304
||||| ||||||||||||||||||| |||||| ||||||| |||||| | | | |
Sbjct 463 AAACAGACCGGAGATTTTGGGAAGGTTTTCAAAGAAACTTGCAAAGGTAAAACAAAGGAA 522
Query 305 TTGA-AAA-A-ATTGCCACAGATG-TTTCGAACGTGTTG-AATAAT-GC----TA-CA-- 351
|| ||| | | || | | | | ||| || |||| | | ||| || || ||
Sbjct 523 GAGATAAAGAGA-TG-GAGAAAAGCTTTGGAGGGTGTGGCCACAATCGCTGGTTACCATT 580
Query 352 CCATCAA--GGGATTTCGACGCCTTCATCGGAATGGGAGTTCATATAGCAAATTTGGGAT 409
| | ||| |||||||||| || || || |||||||||| |||||| | |||| || ||
Sbjct 581 CAAGCAACTGGGATTTCGAAGCATTGATTGGAATGGGAGCTCATATGGAAAATATGCGAG 640
Query 410 TATTACTACGCCTAGATTTGGATGAAGTGAGGATGGTTGGGATTTGGGGTCCGGCTGGGA 469
||| ||||||||||||| ||||| ||||||||| ||||||| ||||||||| ||||||
Sbjct 641 CATTGTTACGCCTAGATTTAGATGACGTGAGGATGATTGGGATATGGGGTCCGCCTGGGA 700
Query 470 TCGGTAAGACCAGC-ATTGCCA-GATCCATGTTTAA-TCAAATCTCC-AGCAGCTTT-CA 524
| |||||||||| | || || | | | | || |||| ||| ||||| || || ||| ||
Sbjct 701 TTGGTAAGACCA-CTATCGCTAGGTTTC-TG-TTAAGCCAAGTCTCCAAG-AG-TTTCCA 755
Query 525 ACTGAGCACAATCATGGTGAATATCAAAGGATGTTATCCAAATCCTTGTCTCGATGAGTA 584
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||
Sbjct 756 ACTGAGCACAATCATGGTGAATATCAAAGAATGTTATCCAAGTCCTTGTCTTGATGAATA 815
Query 585 TAGAGCACAATTGCAACTTCAGAACCAAATGTTGTCTCAGATTATCAACCAGAAAGATAT 644
||| | ||| ||||||||||| ||| ||||||||||| |||| |||||||||||||| ||
Sbjct 816 TAGTGTACAGTTGCAACTTCAAAACAAAATGTTGTCTAAGATGATCAACCAGAAAGACAT 875
Query 645 CAAAATTTCTCATCTAGGAGTCGCTCAAGAAAGGTTGAAAGACAAGAAAGTTTTTCTTGT 704
|| ||| ||||| ||||||| || |||||| |||||||||||||||| || ||||| ||
Sbjct 876 CATGATTCCTCATTTAGGAGTAGCACAAGAACGGTTGAAAGACAAGAAGGTGTTTCTAGT 935
Query 705 TCTTGATGATGTGGATC-GTTTAGGACAATTAGTTGCATTGGCGAAT-AT--T-GAGTGG 759
|||||||||||||||| ||| ||||||| ||| |||||||||||| | | || |||
Sbjct 936 ACTTGATGATGTGGATCAGTT-AGGACAACTAGATGCATTGGCGAAAGAAACTAGA-TGG 993
Query 760 TTTGGTCGTGGAAGTCGGATTATCATCATAACAGAAGATCTCAGAGTTTTGAACGCTTAT 819
||||||| |||||||||||||||||||| ||||||| |||| ||| |||||| ||| ||
Sbjct 994 TTTGGTCCTGGAAGTCGGATTATCATCACAACAGAAAATCTAAGACTTTTGATGGCTCAT 1053
Query 820 -GGAATCAACCATATTTACAAAGTGGA-TTTTCCATCAATTGACGAGGCTATTGAAATCT 877
||| ||||||||||||||||||| || ||||| ||||| ||| |||||| || ||||||
Sbjct 1054 AGGA-TCAACCATATTTACAAAGTAGAATTTTC-ATCAACTGATGAGGCTTTTCAAATCT 1111
Query 878 TTTGCATGTATGCATTTGGTCAAAAACAGCCATATCATGGCTTC 921
| || ||| |||| ||||||||||| || || ||| |||| |||
Sbjct 1112 TCTGTATGCATGCCTTTGGTCAAAAGCATCCCTATAATGGTTTC 1155
Score = 291 bits (157), Expect = 4e-77
Identities = 850/1166 (73%), Gaps = 122/1166 (10%)
Strand=Plus/Plus
Query 1451 CTCATCCGGACAGACTGCACACAATGCAAGGTTTGAATTGTCAATATTTTCGAA-AACTT 1509
||||||| |||| | || | || | |||| | |||| | || | | |||| || || ||
Sbjct 1808 CTCATCCCGACACAGTGAATGCACTACAAGATCTGAACTATC-A-A-TTTC-AAGAAATT 1863
Query 1510 ATATCACTCCGTTGGATGCATTTTCAAAAGA-CAAGTTTGCCTTCTACCTTTAATTCGGA 1568
| || ||| | |||||| ||||| | ||| | | ||||||||||| |||||| ||||
Sbjct 1864 AGATTACTGCATTGGATAAATTTT-AGGAGATTATGCTTGCCTTCTACTTTTAATCCGGA 1922
Query 1569 GTTTCTCGTCG-AGTTAACCATGCATGAC-AGCAAGCT-TCAGAAACTATGGGAAGGAA- 1624
|||||| || | | |||| ||||| | | |||| | | ||| | ||| ||||||||||
Sbjct 1923 GTTTCTTGTTGAACTTAA-CATGCCT-TCTAGCACG-TGTCATACACTCTGGGAAGGAAG 1979
Query 1625 CTAAACCACTTAGAAATATCAAGTGGATGG-TGTTGAGTAATTCTAAAAATTTGAAGGAG 1683
| ||| | ||||||||| |||||||||||| | |||||| |||||| || ||||||||
Sbjct 1980 C-AAAGCGCTTAGAAATCTCAAGTGGATGGAT-TTGAGTTATTCTATAAGCCTGAAGGAG 2037
Query 1684 CTTCCTGATCTTTCAACTGCCACCAATCTTGAA-ACCTTGATTCTAGAAA-ACTGT-TCA 1740
||||||||||||||||||||||| ||||||||| | || ||||| ||| | || | |
Sbjct 2038 CTTCCTGATCTTTCAACTGCCACTAATCTTGAAGAG-TTAATTCTT-AAATATTGCGT-A 2094
Query 1741 AGTTTAATGGAACTTCC-ATCCTCTATTGGAAAACTCT--CAAATCT-CGATTATTTGTG 1796
|||||| || || ||| ||| | | |||||||||| | |||| || | | | ||||||
Sbjct 2095 AGTTTAGTG-AAGGTCCCATCATGTGTTGGAAAACT-TGGCAAA-CTACAAGT-TTTGTG 2150
Query 1797 TCTCGGTGGTTGCT-CAAGCCTGTTGGAGCTCCCTTCTTTTACTAAAAATGTCACCGGTC 1855
|||| ||| || | |||| | ||||||||||| || || || ||||||||||| || |
Sbjct 2151 TCTCCATGGATG-TACAAGTATCTTGGAGCTCCCCTCCTTCACCAAAAATGTCACTGGCC 2209
Query 1856 TCGTG-GATTTAGACCTGAGAGG-GTGCTCAAGTCTAGTAGAGATCCCCTCCTCTATTGG 1913
|| | | |||||| || | | | |||||||||| | || ||| |||| || || |||||
Sbjct 2210 TCCAGAG-TTTAGATCTCA-ATGAGTGCTCAAGTTTGGTGGAGCTCCCTTCTTCGATTGG 2267
Query 1914 TCATGCCATAAATCTTCGAATATT-GGATCTTTCTAAATGCTCAAGTTTGGTGGGGCTCC 1972
||||||||||||| | || ||| ||||||| | || | ||| || | ||| |
Sbjct 2268 GAATGCCATAAATCTCCAAA-ATTTGGATCTTGG-A--TGTTTAAGGCTGCTTAAGCTTC 2323
Query 1973 CGTCCTTTGTTGGGAA-TGCCATTAATCTTC--GAAATGTGTATC-TCAAAGGGTGTTCA 2028
| | | | ||| ||| | | | |||||| | ||||| | |||| |||| || || |||
Sbjct 2324 CTTTGTCTATTGTGAAGTTC-ACTAATCT-CAAGAAAT-T-TATCCTCAATGGATGCTCA 2379
Query 2029 AATCTAGTTGAGCTTCCTTCATCTATTGTGGA--T-CTTATTAATCTTGAGAAAT-TAGA 2084
| |||||| |||||||| | | ||| | ||| | | | ||||| | |||| | ||
Sbjct 2380 AGTCTAGTGGAGCTTCCCT--T-TAT-G-GGAAATGCC-ACAAATCTCCA-AAATCTTGA 2432
Query 2085 TCTTAGTGGTTGCTCAAGTCTGGTGGAGCTCCCATGTATC-A--G-AAATGCTGTTAATC 2140
|||| || ||| || ||| ||||||||||||||| | || | | |||||| ||||||
Sbjct 2433 TCTTGGTAATTGTTCTAGTTTGGTGGAGCTCCCATCT-TCTATAGGAAATGCCATTAATC 2491
Query 2141 TCCAGA-TGTTGGATCTTAGTGATTGTTCAAGTCTGGTGAAGCTCCCTTCTTTTGTAGGA 2199
| || | | ||| |||||||| |||||||||||||||||||||| ||||| ||| | |||
Sbjct 2492 TTCAAAATCTTG-ATCTTAGTAATTGTTCAAGTCTGGTGAAGCTTCCTTCCTTTATCGGA 2550
Query 2200 AATGCAACCAAACTCGAGAAATT-GAATCTCAC-TAATTGCTCAAATCTTTTGGAGCTTC 2257
||||| || || ||||||| || || ||| | ||| ||||||| ||| ||||| | |
Sbjct 2551 AATGCCACTAATCTCGAGATTTTAGAC-CTC-CGTAAATGCTCAAGTCTAGTGGAGATCC 2608
Query 2258 CT--T-CTATTG-ATAATG-CAACTAATCT-TCAGGA-ATT-GTTACTC-GAAAATTGCT 2308
|| | |||||| | | || || ||||||| | ||| ||| | | || | || |||
Sbjct 2609 CTACTTCTATTGGACA-TGTCA-CTAATCTGT--GGAGATTAGAT-CTTAGCGGAT-GCT 2662
Query 2309 CAAGGCTTA-TG-AAGCTTCCTTCCA-CTCTCAGAAATGCCA-TCAACCTCCA-GTTAAT 2363
|||| ||| || || ||||| || | || | |||| || | ||| |||| || |
Sbjct 2663 CAAGT-TTAGTGGAA-CTTCCCTC-ATCTGTTGGAAACATCAGTGAAC-TCCAAGTG--T 2716
Query 2364 T-AATCTCAAAAATTGTTAAAATGTTGTGAAGATTCCCGCTATCGA--G-A-ATGTCACT 2418
| |||||| | || || | |||| | |||||| ||||| || || | | ||| ||||
Sbjct 2717 TGAATCTCCATAACTGCTCAAATCTGGTGAAGCTTCCCTCT-TCTTTTGGACATGCCACT 2775
Query 2419 AATCTCAACTTATTAGACCTTAGCGGATGTTCAAGTCTT-GTAGAGA-T-CCCTCCCTCA 2475
||||| |||||| ||||||||||| |||||| || || || | | ||||| ||
Sbjct 2776 AATCTGTGGAGATTAGATCTTAGCGGATGCTCAAGT-TTAGTGGA-ACTTCCCTCA-TCT 2832
Query 2476 ATTGGAA-CTGTCACTAGTCTCCACAAAT-T-ATATCTTAATGGA--TGCTCAAGTCTCG 2530
||||||| | |||| | |||||| | | | | | ||| || | ||||||| ||| |
Sbjct 2833 ATTGGAAACA-TCACAAATCTCCA-AGAGCTGA-ACCTT--TGCAACTGCTCAAATCTGG 2887
Query 2531 TGGAA-CTTCCCACTTCTATTGGAAA 2555
|| || |||||| |||||||||||||
Sbjct 2888 TG-AAGCTTCCCTCTTCTATTGGAAA 2912
> AT5G38344.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr5:15325831-15326988 FORWARD LENGTH=1158
Length=1158
Score = 355 bits (192), Expect = 2e-96
Identities = 262/296 (89%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 4 CTAAAAGAGTTCAAA-GGAAAGGGAATCGACT-CATTTATTGATAATGATATCGAGAGGA 61
||||||||||||||| ||||| ||| ||| | |||| ||||||||||||||||||||||
Sbjct 357 CTAAAAGAGTTCAAAGGGAAA-GGAGTCG-TTCCATTCATTGATAATGATATCGAGAGGA 414
Query 62 CCAAGTCAATCGGTCCTGAGCTCAAAGAAGCTATCCGAGGATCGAAGATCGCGATCGTCT 121
|||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 415 GCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGATCGTCT 474
Query 122 TGCTTTCGAGAAACTATGCTTCTTCGTCATGGTGCTTAAACGAGTTGATGGAGATCATGA 181
|||| || || |||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 475 TGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCATGA 534
Query 182 ATTGCAGGGAGGATTTGGGTCAAATAGTAATGACCATTTTCTATGAAGTAGATCCAACAG 241
| || || || | |||||||||| ||| ||||||||||||||||| || ||||||||||
Sbjct 535 AGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAACAG 594
Query 242 ATGTAAAGAAACAAACCGGAGATTTTGGGAAGGCCTTCaaaaaaaCTTGTAAAGGT 297
| |||||||| || || |||||||||||||||| |||||| |||||||||||||||
Sbjct 595 ACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGT 650
> AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16195984-16200595 FORWARD LENGTH=4031
Length=4031
Score = 324 bits (175), Expect = 4e-87
Identities = 507/662 (77%), Gaps = 44/662 (7%)
Strand=Plus/Plus
Query 2693 GATGCTCAAAGCT-GGAGGTCCTTCCGATC-AACATCAACTTGGA-ATCTCT-CAAAGTT 2748
||||||||||||| | | | ||||| | | ||||||||||| || |||||| | | |
Sbjct 2792 GATGCTCAAAGCTAGAAACT-CTTCC-AACAAACATCAACTT-GATATCTCTCCGTA-TA 2847
Query 2749 CTTGATCTCATC-TTTTGCACGCGGTTGAAAA-TCTTTCCAGAGATTTCCACAAACATTG 2806
|||||||||| | |||| ||| |||||||| | ||||| ||||| |||||| |||||
Sbjct 2848 CTTGATCTCA-CAGATTGCTCGCAGTTGAAAAGT-TTTCCCGAGATCTCCACACACATT- 2904
Query 2807 T-ATATCTCAATCTT-GTTGGAACTACAATAGAAGAAGTGCCTTTATCGATCA-GATCAT 2863
| | | ||| | || |||||| ||||| ||||||| ||||| ||||||| | || |
Sbjct 2905 TCAGAGCTC-AGGTTAAAAGGAACTGCAATAAAAGAAGTTCCTTTGTCGATCACG-TCGT 2962
Query 2864 GGCCTCGTCTTGATATATTCTG-CATGTCATACTTTGAAAACCTTAATGAATTCCCGCAT 2922
|| ||||||||| | || | || |||||||||||||||| |||||| ||||||||||||
Sbjct 2963 GGTCTCGTCTTGCTGTA-TATGAAATGTCATACTTTGAAAGCCTTAAGGAATTCCCGCAT 3021
Query 2923 GCTCTTGACATCATCACATGTC-TACATTTG--A-GCGGAGATATACAAGAAGTTGCTAC 2978
||||||||||||||||| | | ||| |||| | | | |||||||||||||||| || |
Sbjct 3022 GCTCTTGACATCATCACC-GACCTACTTTTGGTAAGTGAAGATATACAAGAAGTTCCTCC 3080
Query 2979 ATGGGTCAAGGGGATATCTCGTCTA-GAT-CAAATTTTACTCTACGGA-TGCAAAAGGCT 3035
|||||||||| | || |||||| || | | | || |||| || | ||||| || ||
Sbjct 3081 ATGGGTCAAGAGAATGTCTCGTTTACG-TGCTC-TTAGACTCAACA-ACTGCAATAGTCT 3137
Query 3036 GGTATCACTACCTCAGCTACCAGATATC--TT-ATCAGACCTAGATACAGAAAATTGTGC 3092
||||||||| || || || |||||| || || || | | || || |||| ||||||
Sbjct 3138 GGTATCACTCCCACAACTTCCAGAT-TCCCTTGATTACA--TATATGCAGATAATTGTA- 3193
Query 3093 A-TCACTGGAGAAACTAGATTGTTCCTTTCACAATTCGGAGATTCGTCTCAATTTTGCTA 3151
| || || |||| ||| ||||||| |||| ||||| | ||||| |||||| |||| | |
Sbjct 3194 AGTCCCTCGAGAGACTGGATTGTTGCTTTAACAATCCAGAGATCCGTCTCTATTTCCCCA 3253
Query 3152 ACTGCTTCAAACTGAATAAAGAAGCAAGGGACCTCATCATCCAAACATCGACTAGTAAAT 3211
| ||||||||||||||| ||||||| || || |||||||| || ||||| ||| ||||||
Sbjct 3254 AATGCTTCAAACTGAATCAAGAAGCCAGAGATCTCATCATGCACACATCAACTCGTAAAT 3313
Query 3212 ATGCGATCTTACCTGGTCGAGAAGTGTCTTCATCCTTCACTTACAGAGCTGCT---GGAG 3268
||||||| ||||| || | ||||| || | | ||||| | || ||||| || || |
Sbjct 3314 ATGCGATGTTACCAAGTATACAAGTGCCTGCCTGCTTCAATCACCGAGCTACTTCTGGGG 3373
Query 3269 ATTCCGTGACAGTGAAGTTAAATGAAGG-GCCTCTTCCTACATCATTGAGATTTAAGGTT 3327
||| | ||| | | ||||| || || | | ||||||||||| | ||||||||||||| |
Sbjct 3374 ATTACTTGAAAATCAAGTTGAAGGA-GTCGTCTCTTCCTACAACCTTGAGATTTAAGGCT 3432
Query 3328 TG 3329
||
Sbjct 3433 TG 3434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182557505577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5