BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891303

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52500.2 | Symbols: FPG-1, ATFPG-1, ATMMH-1, MMH-1 | MUTM ho...   483    6e-136


> AT1G52500.2 | Symbols: FPG-1, ATFPG-1, ATMMH-1, MMH-1 | MUTM 
homolog-1 | chr1:19559983-19563113 FORWARD LENGTH=1491
Length=1491

 Score =  483 bits (261),  Expect = 6e-136
 Identities = 293/308 (95%), Gaps = 4/308 (1%)
 Strand=Plus/Plus

Query  17   GTATGGCTGATGCTATTTATATCAAAGGCGTTGCAGTTACTAAGTATAAGAGGTCTGCTG  76
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  GTATGGCTGGTGCTATTTATATCAAAGGCGTTGCAGTTACTAAGTATAAGAGGTCTGCTG  349

Query  77   TAAAGGACTCAGAGGAGTGGCCATCTAAGTATTCAAAGTTCTTCGTCGAGCTTGATGATG  136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  TAAAGGACTCAGAGGAGTGGCCATCTAAGTATTCAAAGTTCTTCGTCGAGCTTGATGATG  409

Query  137  GTCTGGAGCTTTCCATT-ACTGATAAGAGGAGATTGGCCAAAGTTCGACTTCTAGCTAAT  195
            ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct  410  GTCTGGAGCTTTC-ATTTACTGATAAGAGGAGATTTGCCAAAGTTCGACTTCTAGCAAAT  468

Query  196  CCAACATCTGTGAGCCCAATATCAGAGCTTCATCC-GAATGCATTGTTAGAGCCTATGAC  254
            || || |||||||| |||||||||||||||  ||| || ||||||||| |||||||||||
Sbjct  469  CCTACTTCTGTGAGTCCAATATCAGAGCTTGGTCCTGA-TGCATTGTTGGAGCCTATGAC  527

Query  255  AGTTGAGGAATTTGCAGAAAACTTAGCTAAAAAGAAAATAACCATAAAACCTCTCCTACT  314
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  528  AGTTGATGAATTTGCAGAAAGCTTAGCTAAAAAGAAAATAACCATAAAACCTCTCCTACT  587

Query  315  TGATCAGG  322
            ||||||||
Sbjct  588  TGATCAGG  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5