BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891313 Length=255 Score E Sequences producing significant alignments: (Bits) Value AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Ut... 132 2e-30 AT3G28230.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 115 2e-25 > AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Utp) family protein | chr2:18099238-18103345 FORWARD LENGTH=2355 Length=2355 Score = 132 bits (71), Expect = 2e-30 Identities = 109/126 (87%), Gaps = 8/126 (6%) Strand=Plus/Plus Query 126 AGATGGT-A-T-ACATAGGATTGACCCTGGCAACGCAACAAGGATCTTAAAAACCCGAGA 182 ||||||| | | ||| ||||||||||| |||||||||||| ||| || |||||||||||| Sbjct 1961 AGATGGTGAGTAACAGAGGATTGACCC-GGCAACGCAACAGGGACCTCAAAAACCCGAGA 2019 Query 183 AAGAAGTACCGGAAAAAGCACGTACGAGAAAAAAGTCAATAGTTGCAAAGGACATGTCAG 242 ||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| Sbjct 2020 AAGAAGTACCGGAAAAAT----TACGAGAAAAAAGTCACTAGACGCAAAGGACAGGTCAG 2075 Query 243 AGATAT 248 |||||| Sbjct 2076 AGATAT 2081 > AT3G28230.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10529215-10530199 FORWARD LENGTH=624 Length=624 Score = 115 bits (62), Expect = 2e-25 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 20 AATCAAAAGGCTCAAAAGATGAATATTACAAACAAGTGAAACAGAAACAAGAAGCTAAAC 79 ||||| ||| |||| ||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 272 AATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGAAGCTAAAA 331 Query 80 GAGTTGCCAAAGCAGAGATCTATTCAAGG 108 || |||||||||||| |||||||||||| Sbjct 332 AAGCTGCCAAAGCAGAAATCTATTCAAGG 360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11611850019 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5