BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891313

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Ut...   132    2e-30
  AT3G28230.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   115    2e-25


> AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Utp) 
family protein | chr2:18099238-18103345 FORWARD LENGTH=2355
Length=2355

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 109/126 (87%), Gaps = 8/126 (6%)
 Strand=Plus/Plus

Query  126   AGATGGT-A-T-ACATAGGATTGACCCTGGCAACGCAACAAGGATCTTAAAAACCCGAGA  182
             ||||||| | | ||| ||||||||||| |||||||||||| ||| || ||||||||||||
Sbjct  1961  AGATGGTGAGTAACAGAGGATTGACCC-GGCAACGCAACAGGGACCTCAAAAACCCGAGA  2019

Query  183   AAGAAGTACCGGAAAAAGCACGTACGAGAAAAAAGTCAATAGTTGCAAAGGACATGTCAG  242
             |||||||||||||||||     |||||||||||||||| |||  |||||||||| |||||
Sbjct  2020  AAGAAGTACCGGAAAAAT----TACGAGAAAAAAGTCACTAGACGCAAAGGACAGGTCAG  2075

Query  243   AGATAT  248
             ||||||
Sbjct  2076  AGATAT  2081


> AT3G28230.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED 
IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; 
CONTAINS InterPro DOMAIN/s: Something about silencing 
protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis 
thaliana protein match is: Sas10/U3 ribonucleoprotein 
(Utp) family protein (TAIR:AT2G43650.1); Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10529215-10530199 
FORWARD LENGTH=624
Length=624

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 80/89 (90%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  20   AATCAAAAGGCTCAAAAGATGAATATTACAAACAAGTGAAACAGAAACAAGAAGCTAAAC  79
            ||||| ||| |||| ||||||||| ||||| |||||||||||||||||||||||||||| 
Sbjct  272  AATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGAAGCTAAAA  331

Query  80   GAGTTGCCAAAGCAGAGATCTATTCAAGG  108
             || |||||||||||| ||||||||||||
Sbjct  332  AAGCTGCCAAAGCAGAAATCTATTCAAGG  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5