BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891319
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25010.1 | Symbols: | Aminotransferase-like, plant mobile d... 396 8e-110
AT5G37352.1 | Symbols: | Pseudogene of AT2G25010 | chr5:147961... 329 9e-90
> AT2G25010.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr2:10631531-10633663 FORWARD LENGTH=1806
Length=1806
Score = 396 bits (214), Expect = 8e-110
Identities = 227/233 (97%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 1 ATGACTATAACTTTAGATC-AAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCC 59
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 449 ATGACTATAACCTTAGA-CGAAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCC 507
Query 60 TATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGG 567
Query 120 GAAGTTACCTTCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCT 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GAAGTTACCATCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCT 627
Query 180 TAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCCATGTTGTTAAAT 232
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 628 TAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCGATGTTGTTAAAT 680
> AT5G37352.1 | Symbols: | Pseudogene of AT2G25010 | chr5:14796126-14797001
FORWARD LENGTH=790
Length=790
Score = 329 bits (178), Expect = 9e-90
Identities = 209/224 (93%), Gaps = 1/224 (0%)
Strand=Plus/Plus
Query 10 ACTTTAGATCAAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCCTATTGTTGGT 69
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 10 ACTTTAGACCAAGTTGCTTTACTACTTGGGCTTGAGATTGATGGAGATCCTATTGTTGGT 69
Query 70 TCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGGGAAGTTACCT 129
||||||||||||||||||||| |||||||| |||||||||||||||||||||| || ||
Sbjct 70 TCTAAAGTTGGTGATGAGGTTTCTATGGATCTGTGTGGTAGACTTTTAGGGAAATTGCCA 129
Query 130 TCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAA-GCTTAATTGGCTTAAAAGAAC 188
||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 130 TCTGCTGCTAACAAAGAAGTTAATTGTTCTAGGGTTAAAGCTTAATTTCCTTAAAAGAAC 189
Query 189 TTTCTCTGAGTGTCCTGAAGATGCTTCTTTCCATGTTGTTAAAT 232
|||||||||||||||||||||||||||||| |||||||| |||
Sbjct 190 TTTCTCTGAGTGTCCTGAAGATGCTTCTTTTGATGTTGTTGAAT 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16889963664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5