BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891321

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32235.1 | Symbols:  | unknown protein; Has 38 Blast hits to...   183    2e-45


> AT2G32235.1 | Symbols:  | unknown protein; Has 38 Blast hits 
to 38 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa 
- 11; Fungi - 11; Plants - 11; Viruses - 0; Other Eukaryotes 
- 1 (source: NCBI BLink). | chr2:13682557-13685500 REVERSE 
LENGTH=2156
Length=2156

 Score =  183 bits (99),  Expect = 2e-45
 Identities = 151/175 (86%), Gaps = 7/175 (4%)
 Strand=Plus/Minus

Query  234   GAGAAGATCGGATTCT-CGTCGGATTGAATTCCACCACTGGAAGCGGAATCTTCGAATAT  292
             ||| ||| |||||| | ||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct  1339  GAGGAGAACGGATT-TGCGTCGGATTGAATTCAACCACAGGAAGCGGAATCTTTGAATAT  1281

Query  293   CCGATGAGATTC--G-CGTCTTCTTCCTCAGATCGT-TGAAGAAACAGTTTCTTGCGTCT  348
             || |||||||||  | | ||||||||||||| || |  ||| |||||| |||||||||||
Sbjct  1280  CCCATGAGATTCGGGTCTTCTTCTTCCTCAGGTC-TCGGAATAAACAGCTTCTTGCGTCT  1222

Query  349   AGGCTCGTCGGCTTCCTTCGATTCCGGCGATGGACGTTTCACGGGGCTGGTGGTT  403
              ||||||||  ||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct  1221  CGGCTCGTCACCTTGCTTCGATTCCGGCGATGGACGTTTCACGGGACTGGTTGTT  1167


 Score = 80.5 bits (43),  Expect = 3e-14
 Identities = 51/55 (93%), Gaps = 0/55 (0%)
 Strand=Plus/Minus

Query  188   GAGCTTTCTGGATTCACAAGCTCAGCTTCAGGAATTGCATTGGAGCGAGAAGATC  242
             ||||||||||||||| | || ||| ||||||||||||||||||||||||||||||
Sbjct  1598  GAGCTTTCTGGATTCGCGAGATCACCTTCAGGAATTGCATTGGAGCGAGAAGATC  1544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46366117681


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5