BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891335 Length=1683 Score E Sequences producing significant alignments: (Bits) Value AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 665 0.0 AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 647 0.0 AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 479 4e-134 AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 473 2e-132 AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 375 5e-103 AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 217 3e-55 > AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:16670001-16674966 REVERSE LENGTH=2268 Length=2268 Score = 665 bits (360), Expect = 0.0 Identities = 598/711 (84%), Gaps = 24/711 (3%) Strand=Plus/Plus Query 847 TTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACAAA 906 |||||||||||||||| | |||| ||||||||||| ||| ||||| |||||| | |||| Sbjct 1334 TTTGTTGAGGCAGTTGGCGTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCACGCAAA 1393 Query 907 ACT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATATTCG 965 ||| ||| | | || || || ||||||||||||||||||||||||||||||||| |||| Sbjct 1394 ACTGAAA-TAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCG 1452 Query 966 ACTTATTGTAGACCATA-AGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTCTG 1024 |||||| || |||| | ||| ||||| |||||||| || |||||| | ||||| ||||| Sbjct 1453 GCTTATTCTAAACCACACAGG-CAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTCTG 1511 Query 1025 CTAACGAAGCAAAGAAGGCACTAGAAAAGAAGAACGGTGAATATTTGCACGATCGCAAGA 1084 ||||||||||||||| ||| | |||| ||| ||||||||||||||| ||||| |||||| Sbjct 1512 CTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACGATTGCAAGA 1571 Query 1085 TTTCTCTTGGAGAGGCTACGATAGCTCCATACCCTACACCAAAGTATTGCATAGATCACA 1144 ||| ||||| || ||||| ||| | |||||||||| |||| |||||||||||| |||||| Sbjct 1572 TTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTCCACCCAAGTATTGCATACATCACA 1631 Query 1145 AGGTTTGGAACGAAGACTACCTTCGACGAGAAAAGC-TTCTGGCGGAAGAAGATGAGGCA 1203 |||||||| |||||||||||||||||||||||| || ||||| |||||| ||||| || Sbjct 1632 AGGTTTGGTACGAAGACTACCTTCGACGAGAAA-GCCTTCTGATAGAAGAAAATGAGACA 1690 Query 1204 GTGGAAGGACTTGATAAAACTCCTGTTTTTGTTGAGGACCTTGGGGTAAGGAAAAAGACG 1263 | ||||||||||||| | ||||| | | |||||||||| ||| ||||| ||||||||| Sbjct 1691 GAGGAAGGACTTGATGACACTCCCGCTCTTGTTGAGGAATTTGCCGTAAGAAAAAAGACG 1750 Query 1264 CTCTTTGTTGCCAATCTCT-ATCACAAAACTAGACTATCACATATCATCA-GTTTCTTCA 1321 ||||||||||||||||||| | | || ||||| | ||||||||||||||| |||| || | Sbjct 1751 CTCTTTGTTGCCAATCTCTCACC-CAGAACTAAAATATCACATATCATCAAGTTTTTT-A 1808 Query 1322 AAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGG 1381 ||||||||| |||||||||| ||||||||||||||||| |||||| | |||||| | ||| Sbjct 1809 AAGATGTTGCAGAAGTTGTTCGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGG 1868 Query 1382 GCTGTGGCTTTGTTGAGTTTGCTTCTTCTTA-CGAAGCAAAGAAGGCGCTAG-AAACGAA 1439 |||||||||||||||||||||||||| ||| ||||||| |||||||||| | ||| || Sbjct 1869 GCTGTGGCTTTGTTGAGTTTGCTTCTG-TTAACGAAGCACAGAAGGCGCT-GCAAAAGAT 1926 Query 1440 GATTAGT-AAAGCATTAATGGGTCAATT-T-A--TTTTTCTTGACGTGGCTGAGATACCT 1494 || | || ||| ||| || | || | | | ||||||||||||||| |||| || || Sbjct 1927 GAATGGTGAAA--ATT--TGCG-CAGTCGTGAGATTTTTCTTGACGTGGTTGAGTTAGCT 1981 Query 1495 CTATGCCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAA 1545 | || ||||||||||||||||||||||| ||||||||| |||||| ||||| Sbjct 1982 CCATACCCTCTCCGACCCAAGTACAACCATGCAGAGAAACTTTGGCACGAA 2032 Score = 636 bits (344), Expect = 0.0 Identities = 591/708 (83%), Gaps = 26/708 (4%) Strand=Plus/Plus Query 112 AAGGAAGCTGCCGTAACAAAAAAGAAGCTCTTTGTTGACAATCTCTCTCCCGAAATTAAA 171 ||||||||||| |||| | | |||| ||||||||||| ||||||| || |||| |||| Sbjct 620 AAGGAAGCTGCAGTAAGAGAGAAGACGCTCTTTGTTGCCAATCTCCCTTATGAAACTAAA 679 Query 172 ATGTCAAATATCATCGATTTCTTCAAAAATGTTGGAAG-AGTTGTTCGTGTTCAGCTTAT 230 || ||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||| Sbjct 680 ATACCAAATATCATCGATTTCTTCAAAAAGGTTGG-AGAAGTTGTTCGTGTTCAACTTAT 738 Query 231 TTTAGACCTCAAGAATAAGCTCGCGGGCTCTGGCTTTGTTGAGTTTGCTTCTGCTAATGA 290 | || |||||||| |||||| | ||| | ||||||||||||||||||||||| |||||| Sbjct 739 TGTAAACCTCAAGGGTAAGCTTGTGGGTTGTGGCTTTGTTGAGTTTGCTTCTGTTAATGA 798 Query 291 AGCAGAGAAGGTGGCGCTGGAAGAGAAGAACGGTGAAT-TTTTGCTCAATCGCAAGATTT 349 ||| || ||| ||||||| || ||||||||||||||| ||| | |||| ||||||| Sbjct 799 AGC--AG-AGGAGGCGCTGCAAAAGAAGAACGGTGAATGTTTAG-ACAATAATAAGATTT 854 Query 350 TTATTGA---AGC-ACCTAAG--A-CTGC-T-CC-ACTACCCAAGTATTGCATAGATCAC 399 || |||| || | |||| | || | | || | |||||||||||||||||||||| Sbjct 855 TTCTTGATGTGGCTA-ATAAGAAAGCTACATACCTTCCACCCAAGTATTGCATAGATCAC 913 Query 400 AAGGTTTGGTATGAAGACTACCTTCGACGAGAACGCCTTCCCATTGATGATGATGAGACA 459 ||||||||| | ||||||||| | ||| |||| ||| ||| || || || ||||||| | Sbjct 914 AAGGTTTGGGACAAAGACTACCGTAGACTAGAAAGCCATCCAATAGAAGAAGATGAGAGA 973 Query 460 CCTCACGATTT-TGTTGAGCAAGTACTCTTTGTTACCAATCTCTCTCCCCAAACTAAAAT 518 |||| | | || ||||||| |||||||||||||| ||||||| ||||| ||||||||||| Sbjct 974 CCTC-CTAATTCTGTTGAGGAAGTACTCTTTGTTGCCAATCTTTCTCCTCAAACTAAAAT 1032 Query 519 ATCAGATATCAT-GCATTTCTTCAAAAACGTTGGAGAAGTTGTTAGTGTTCGACTTATTG 577 |||||||||| | | |||||||||| |||||||||||||| ||| |||||||||| | Sbjct 1033 ATCAGATATCTTCG-ATTTCTTCAATTGTGTTGGAGAAGTTGTAAGTATTCGACTTATGG 1091 Query 578 TAAACCATGTGGGCAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC-ATA 636 ||||||||| || ||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 1092 TAAACCATGAAGGTAAGCATGTGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAA 1151 Query 637 GCAAAGATGGCTCTGGAAGAG-ATGCATGGTGAATATTTGCTTGATCATATGATTTTTCT 695 |||| | ||| ||||| || | | ||||||||||||||| ||||||| ||||||| | Sbjct 1152 -CAAAAAAGGCACTGGA-GAACAAGAATGGTGAATATTTGCACGATCATAAGATTTTTAT 1209 Query 696 TCATGTGGCTAAGGCAGCTCCATACCCTCCACGACCCAAGTACAACCTTGCAGAGATGCT 755 | ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||| Sbjct 1210 TGATGTGGCTAAGACAGCTCCATACCCTCCAGGACCCAAGTACAACCTTGTAGAGAAGCT 1269 Query 756 TTGTTACGAGGACTACCTTCGACGTGGAAGCCTTCTGATAGAAGAAGA 803 ||||||||| |||||||||||||| | |||||||| |||||| ||||| Sbjct 1270 TTGTTACGAAGACTACCTTCGACGAGAAAGCCTTCCGATAGATGAAGA 1317 Score = 364 bits (197), Expect = 1e-99 Identities = 547/707 (77%), Gaps = 60/707 (8%) Strand=Plus/Plus Query 883 TTTATTGCCAATCTCTGT-CACAAAACTAAACCATCACACAT-TATCAATTTCTTCAA-A 939 ||| |||||||||| | | | | |||||||| |||| | || | || |||||||||| Sbjct 1001 TTTGTTGCCAATCTTTCTCCTC-AAACTAAAATATCAGATATCT-TCGATTTCTTCAATT 1058 Query 940 GATGTTGGAGAAGTTGTTCA-TATTCGACTTATTGTAGACCAT-AAGGGCAAGCTTGTGG 997 | |||||||||||||| | | |||||||||||| ||| ||||| || || |||| ||||| Sbjct 1059 G-TGTTGGAGAAGTTG-TAAGTATTCGACTTATGGTAAACCATGAA-GGTAAGCATGTGG 1115 Query 998 GCTATGGCTTTGTTGTGTTTGCTTCTGCTAACGAAGCAAAGAAGGCACTAGAAAAGAAGA 1057 | ||||||||||||| ||||||||||||| ||||| |||| |||||||| || || |||| Sbjct 1116 GTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTGGAGAACAAGA 1175 Query 1058 ACGGTGAATATTTGCACGATCGCAAGATTTCTCTTGGA-GAGGCTACGATAGCTCCATAC 1116 | ||||||||||||||||||| ||||||| | || || | ||||| || |||||||||| Sbjct 1176 ATGGTGAATATTTGCACGATCATAAGATTTTTATT-GATGTGGCTAAGACAGCTCCATAC 1234 Query 1117 CCT--A-CACCAAAGTATTGCATAGAT-CACAAGGTTTGGAACGAAGACTACCTTCGACG 1172 ||| | ||| ||||| | | | | | ||| |||| ||||||||||||||||||| Sbjct 1235 CCTCCAGGACCCAAGTACAACCTTG-TAGAGAAGCTTTGTTACGAAGACTACCTTCGACG 1293 Query 1173 AGAAAAG-CTTCTGGCGGAAGAAGATGAGGCAGTGGAAGGACTTGATAAAACTCCTGTTT 1231 || |||| |||| | ||| | | | | ||| || ||| | | |||||| | Sbjct 1294 AG-AAAGCCTTC---C-------GAT-A-G-A-T-GAA-GA--TGAGACACCTCCTGAAT 1334 Query 1232 TTGTTGAGGAC-CTTGGGGTAAGGAAAAAGACGCTCTTTGTTGCCAATCTCT-ATCACAA 1289 ||||||||| | |||| ||||||||||||||||||||||||||| |||||| | | ||| Sbjct 1335 TTGTTGAGG-CAGTTGGCGTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCA-CGCAA 1392 Query 1290 AACT-AGACTATCACATATCATCAGTTTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTC 1348 |||| | | || | |||||||| | |||||||||||||||||||||||||||| ||||| Sbjct 1393 AACTGAAA-TAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTC 1451 Query 1349 GACTTATTGTAGACCACATGAGTG-A-GCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTC 1406 | |||||| || |||||| || | | || | ||||||||| |||||| ||||||| ||| Sbjct 1452 GGCTTATTCTAAACCACAC-AG-GCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTC 1509 Query 1407 TTCTTACGAAGCAAAGAAGGCGCTAGAAACGAAGATTAGTAAAGCATT--AATGGGT-CA 1463 | || |||||||||||| |||| | |||||||| | || || ||| || | | || Sbjct 1510 TGCTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAAT-ATTTGAACGATTGCA 1568 Query 1464 ATTTATTTTTCTTGACGTGGCTGAGATACCTCTATGCCCTCTCCGACCCAAGTACAACCT 1523 | ||||||||||| |||||| |||| || || ||||| | ||||||||| | | Sbjct 1569 AG--ATTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTC-C--ACCCAAGTATTGCAT 1623 Query 1524 TGCAG-AGAAGCTTTGGTACGAAGACTACCTTA-ACCAAGAAAGCCT 1568 || | ||| |||||||||||||||||||| || | |||||||| Sbjct 1624 A-CATCACAAGGTTTGGTACGAAGACTACCTTCGACGA-GAAAGCCT 1668 > AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 REVERSE LENGTH=895 Length=895 Score = 647 bits (350), Expect = 0.0 Identities = 575/680 (85%), Gaps = 30/680 (4%) Strand=Plus/Plus Query 371 CTCCACTACCCAAGTATTGCATAGATCACAAGGTTTGGTATGAA-GACTACCTTCGACGA 429 ||||| || |||||||||||||||| ||| |||||| || || |||||||||| |||| Sbjct 28 CTCCAGGACTCAAGTATTGCATAGATTACACGGTTTGCTA-CAACGACTACCTTCAACGA 86 Query 430 GAACGCCTTCCCATTGATGATGATGAGACACC-TCACGATTTTGTTGAGCAAGTACTCTT 488 ||| ||||||| || || || |||||||||| || ||||||||||||| ||||||||| Sbjct 87 GAAAGCCTTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTA 145 Query 489 TGTTACCAATCTCTCTCCCCAAACTAAAATATCAG-ATATC-ATGCATTTCTTCAAAAAC 546 |||| ||||||||||||||||||||||||||| | || || | | | ||||||||| | Sbjct 146 TGTTGCCAATCTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAG-AATTCTTCAAAGAT 203 Query 547 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTAT 606 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 204 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA-------A-GCATGTGGGCTAT 255 Query 607 GGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGATGGCTCTGGAAGAGATGCATGG 665 ||||||||||| ||||||||| ||||| | |||||||| ||| ||| || ||| | |||| Sbjct 256 GGCTTTGTTGACTTTGCTTCTTCTAACGA-AGCAAAGAAGGCGCTGCAAAAGAAGAATGG 314 Query 666 TGAATATTTGCTTGATCAT-ATGATTTTTCTTCATGTGGCTAAGGCAGCTCCATACCCTC 724 ||||||||||| ||||||| | |||||||||||| ||||||||| |||||||||||||| Sbjct 315 TGAATATTTGCATGATCATCA-GATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTA 373 Query 725 CACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACCTTCGACGTGGAA 784 ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || Sbjct 374 CACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAA 433 Query 785 GCCTTCTGATAGAAGAAGAAGAAGATGTGTCAGTGGAAGGACCTGATGAAAGTCCTAAGC 844 |||| |||||||| |||| || || | |||||||||||| |||||||| ||| || Sbjct 434 ACCTTGTGATAGAATAAGATGA-GACA-G-CAGTGGAAGGACTTGATGAAACTCCCAA-- 488 Query 845 CTTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACA 904 |||||||||||||||||| |||||||||||||||| ||| || || ||||| || | Sbjct 489 -TTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CG 546 Query 905 AAA-CT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATAT 962 || || ||| |||| | || ||||||||||||||||| |||||| ||||||| ||| | Sbjct 547 GAAGCTCAAAT-ATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGT 605 Query 963 TCGACTTATTGTAGACCATAAGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTC 1022 |||||||||||||||| | | |||| ||| ||||||| |||||||||||| ||||||||| Sbjct 606 TCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGATGGCTTTGTTGAGTTTGCTTC 665 Query 1023 TGCTAACGAAGCAAAGAAGG 1042 ||||||||||||| |||||| Sbjct 666 TGCTAACGAAGCAGAGAAGG 685 Score = 220 bits (119), Expect = 3e-56 Identities = 241/297 (81%), Gaps = 20/297 (7%) Strand=Plus/Plus Query 1264 CTCTTTGTTGCCAATCTCTATCACAAAACTAGACTATCACATATCATCAG-TTTCTTCAA 1322 |||| |||||||||||||| || | |||||| | ||| ||| ||| || |||||||| Sbjct 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199 Query 1323 AGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGGG 1382 ||||||||||||||||||| ||||||||||||||||| | || | ||| | |||| Sbjct 200 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTA-A--AC--CA---AGCATGTGGG 251 Query 1383 CTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTAG-AAACGAAGA 1441 || |||||||||||| |||||||||||| ||||||||||||||||||| | ||| ||||| Sbjct 252 CTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCT-GCAAAAGAAGA 310 Query 1442 TTAGTAAAGCA-TT-AATGGGTCAAT-TTATTTTTCTTGACGTGGCTGAGATACCTCTAT 1498 | || || | || || | || || ||||||||| | |||||| ||| | ||| || Sbjct 311 ATGGTGAA-TATTTGCAT-GATC-ATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCAT 367 Query 1499 GCCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTT 1554 |||| | |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 368 ACCCT-ACACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTT 423 Score = 163 bits (88), Expect = 5e-39 Identities = 139/163 (85%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 484 CTCTTTGTTACCAATCTCTCTCCCCAAACTAAAATATCAGATATCATGC-ATTTCTTCAA 542 ||||||||| || ||||||||| || || |||||||||||||||| | |||||||||| Sbjct 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCAT-CAATTTCTTCAA 581 Query 543 AAACGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGG 601 | |||||||| |||||| || |||||||||||||||| || | |||| ||||||||| Sbjct 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGG 640 Query 602 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGA 643 || ||||||||||||||||||||||||||||| | |||| ||| Sbjct 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGA-AGCAGAGA 682 > AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein | chr3:18103152-18110216 FORWARD LENGTH=2766 Length=2766 Score = 479 bits (259), Expect = 4e-134 Identities = 432/514 (84%), Gaps = 17/514 (3%) Strand=Plus/Plus Query 533 ATTTCTTCAAAAACGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGTGGGCA 592 |||||||||| | |||||||||||||||||||||||||||||||||| || | | | | Sbjct 2219 ATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGTA 2278 Query 593 AGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACATAGCAAAGATGGCTCTGG 652 ||||||||||||||||||||||||||||||||||| || | ||||||| ||||| |||| Sbjct 2279 AGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGG 2338 Query 653 AAGAGATGCATGGTGAATATTTGCTTGATCATATGATTTTTCTTCATGTGGCTAAGGCAG 712 || ||| | ||||||||||||||| ||||||| |||||||||| |||||||||| ||| Sbjct 2339 AAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAG 2398 Query 713 CTCCATACCCTCCACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACC 772 |||| |||||||||||| |||||||||||||||||||| |||||| ||||| ||||| | Sbjct 2399 CTCCGTACCCTCCACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTATC 2458 Query 773 TTCGACGTGGA-AGCCTTCTGATAGAAGAAGAAGAAGATGTGTCAGTGGAAGGACCTGAT 831 ||| ||| | | |||||||||||||||||||| || || |||||||||||| |||| Sbjct 2459 TTCTACGAG-ATAGCCTTCTGATAGAAGAAGATGA-GA-----CAGTGGAAGGACTTGAT 2511 Query 832 GAAAGTCCTAAGCCTTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCT-ATTTATTGC 890 |||| ||||| | || |||||||||||||||| ||||| ||||| ||| ||| ||||| Sbjct 2512 GAAACTCCTA-G--TTGTGTTGAGGCAGTTGCCTTAAGAGAAAAGGTGCTCATT-ATTGC 2567 Query 891 -CAATCTCTGTCACAAAACTAAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAG 949 || | || || | ||| ||| |||||| || ||| ||||||||||||||| |||| Sbjct 2568 GCA-TGTCCCTCGCCGAACAAAAATATCACATATCATCGATTTCTTCAAAGATGCTGGAC 2626 Query 950 AAGTTGTTCATATTCGACTTATTGTAGACCATAAGGGCAAGC-TTGTGGGCTATGGCTTT 1008 |||||||| || | ||||||||||||||||| |||||||||| || ||| | ||||||| Sbjct 2627 AAGTTGTTAATGTCCGACTTATTGTAGACCAAAAGGGCAAGCCTTTTGGCCG-TGGCTTT 2685 Query 1009 GTTGTGTTTGCTTCTGCTAACGAAGCAAAGAAGG 1042 |||| |||| |||||||| ||||||||||||||| Sbjct 2686 GTTGAGTTTACTTCTGCTGACGAAGCAAAGAAGG 2719 Score = 185 bits (100), Expect = 1e-45 Identities = 200/247 (81%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 1314 TTTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGT-AGACCAC-ATGAGT 1371 ||||||||| |||||||||||||||||| |||||||||||||||| || || | | |||| Sbjct 2220 TTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAG-CCCCGA-GAGT 2277 Query 1372 GAGCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTA 1431 ||| | |||||| |||||||||||||||||||||| ||| | |||||| | |||||| Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTG 2337 Query 1432 GAAACGAAGATTAGTAAAGCA-TT-AATGGGTCAAT-TTATTTTTCTTGACGTGGCTGAG 1488 |||| ||||| | || || | || | | || || |||||||||| |||||| || Sbjct 2338 GAAAAGAAGAATGGTGAA-TATTTGCA-CGATC-ATAAGATTTTTCTTGGTGTGGCTAAG 2394 Query 1489 ATACCTCTATGCCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGA 1547 | | ||| | ||||| | ||| |||||||||||||||||||||||||||||||||||| Sbjct 2395 ACAGCTCCGTACCCTC-CACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGA 2453 Query 1548 CTACCTT 1554 ||| ||| Sbjct 2454 CTATCTT 2460 Score = 108 bits (58), Expect = 2e-22 Identities = 163/212 (77%), Gaps = 14/212 (7%) Strand=Plus/Plus Query 867 AAGAAAAAAGACG--CTATTTATTGCCAATCTCTGTCACAAAACTAAACCAT--CACACA 922 ||||||||||||| |||| | ||| | |||| || | | |||||| || || | | Sbjct 1803 AAGAAAAAAGACGCTCTATGT-TTG-CTGTCTCCCTCGCGACACTAAA--ATGCCAGATA 1858 Query 923 TTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TATTCGACTTATTGTAGACCAT 981 | ||| |||||||||||||||||||| |||||||| | | ||| ||||| | | | | Sbjct 1859 TCATCGATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTACTACAAAACGC 1917 Query 982 AAGGGCAAGC-TTGTGGGCTA-TGGCTTTGTTGTGTTTGCTTCTGCTAACGAAGCAAAGA 1039 || || || || | | | | |||||| |||| |||||||||||||||||||||||||| Sbjct 1918 AACGGTTTGCGTT-T-GTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAAAGA 1975 Query 1040 AGGCACTAGAAAAGAAGAACGGTGAATATTTG 1071 |||| || || | |||||| |||||||||||| Sbjct 1976 AGGCGCTGGATATGAAGAATGGTGAATATTTG 2007 Score = 58.4 bits (31), Expect = 2e-07 Identities = 36/38 (95%), Gaps = 2/38 (5%) Strand=Plus/Plus Query 72 CAAACCGATTCTGAAGAAACATAAGGAAAAATTC-GAG 108 |||||||||||||||||||||||||||||| ||| ||| Sbjct 1605 CAAACCGATTCTGAAGAAACATAAGGAAAA-TTCCGAG 1641 > AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:17050631-17052189 FORWARD LENGTH=1494 Length=1494 Score = 473 bits (256), Expect = 2e-132 Identities = 575/723 (80%), Gaps = 46/723 (6%) Strand=Plus/Plus Query 846 TTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACAA 905 ||||| ||||| || |||||| | | |||| ||||| ||| ||||||||||| || || Sbjct 714 TTTTGCTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCAATCTCCGTGACTC 770 Query 906 AACT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATATTC 964 | | | | |||| | || |||||||||||||||||||||||||||||||||||| ||| Sbjct 771 CATTCAGA-TATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTC 829 Query 965 GACTTATTGTAGACCATA-AGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTCT 1023 ||||||||||| || | |||| |||| || ||||| || ||||||| |||||||||| Sbjct 830 GACTTATTGTAAAC-AGCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCT 888 Query 1024 GCTAACGAAGCAAAGAAGGCACTAGAAAAGAAGAACGGTGAATATTTGCACGATCGCAAG 1083 |||||||||||| ||||||| || | |||||| |||||||||||||||| || |||| Sbjct 889 GCTAACGAAGCAGAGAAGGCGCTGGTAAAGAA---CGGTGAATATTTGCACAATTACAAG 945 Query 1084 ATTTCTCTTGGA-G-AGGCTACGATAGCTCCATACCCTACACCAAAGTATTGCATAGATC 1141 |||||||||| | | || ||| || ||||||| ||| | |||| |||| |||| |||||| Sbjct 946 ATTTCTCTTG-ACGGAG-CTAAGACAGCTCCACACCGTCCACCCAAGTTTTGCCTAGATC 1003 Query 1142 ACAAGGTTTGGAACGAAGACTACCTTCGACGAGAAAAGC-TTCTGGCGGAAGAAGATGAG 1200 ||||||||||| ||||||||||||||||| |||| | || |||| |||||| |||| Sbjct 1004 ACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAGA-GCCTTCTCATTAAAGAAGTTGAG 1062 Query 1201 GCAGTGGAAGGACTTGATAAAACTCCTGTTTTTGTTGAGGACCTTGGGGTAAGGAAAAAG 1260 | |||||||||||||||| ||||||||| |||| ||||||| ||| | ||| ||||| Sbjct 1063 GGAGTGGAAGGACTTGATGAAACTCCTGATTTTCTTGAGGAAGTTGCTGCAAGAAAAAAT 1122 Query 1261 AC-GCTCTTTGTTGCCAATCTCTATCACAAAACTAGACTA-TC--AC-A--TATCATCAG 1313 || | | ||||| ||||||||| | |||| | | ||| | || | |||||||| Sbjct 1123 ACAGTT-TTTGTCGCCAATCTCCCTTACAACTGTCGTCTAATAGTACCAACTATCATCAA 1181 Query 1314 TTTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGA 1373 |||||||| |||||||||||| ||||| | ||||| ||||||||||||||||| |||| Sbjct 1182 TTTCTTCAGTGATGTTGGAGAAATTGTTCATATTCGAATTATTGTAGACCACATGGGTGA 1241 Query 1374 GCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTAGA 1433 || | |||||||||||||||| |||||| |||||| |||||||| |||||||||| | Sbjct 1242 GCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAACGAAGCAGAGAAGGCGCT-GC 1300 Query 1434 AACGAAGATTAGTAAAGCATTAATGGGTCAATTTATTTTTCTTGACGTGGCTGAGATACC 1493 || |||| || | | | || | || |||| | ||||||||||||||||| | Sbjct 1301 AA--AAGA--AG-A---C-T----GG-T-AAG--ATTTCTGTTGACGTGGCTGAGATAGC 1343 Query 1494 T-CTATGCCCTCTCCGACCCAAGTACAACCTTGC-AGAGAAGCTTTGGTACGAAGACTAC 1551 | | || |||| | |||||||||||||| |||| | |||||||||||||||||||| || Sbjct 1344 TTC-ATACCCTGTTGGACCCAAGTACAACGTTGCTA-AGAAGCTTTGGTACGAAGACAAC 1401 Query 1552 CTT 1554 ||| Sbjct 1402 CTT 1404 Score = 156 bits (84), Expect = 8e-37 Identities = 148/178 (83%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 1256 AAAAGACGCTCTTTGTTGCCAATCTCTATCACAAAACT-AGACTATCACATATCATCAGT 1314 |||| ||||||||||||||||||||| | || | | ||| ||||| ||||||||| | Sbjct 738 AAAA-ACGCTCTTTGTTGCCAATCTCCGTGACTCCATTCAGA-TATCAGATATCATCAAT 795 Query 1315 TTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCA-C-ATGAGTG 1372 ||||||||||||||||||||||||||| |||||||||||||||| || | | | | | Sbjct 796 TTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCCAGG-GAA 853 Query 1373 AGCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCT 1430 ||| | |||||| || |||||||||||||||||| || |||||||| |||||||||| Sbjct 854 AGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCT 911 > AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:18112721-18114070 REVERSE LENGTH=570 Length=570 Score = 375 bits (203), Expect = 5e-103 Identities = 359/431 (83%), Gaps = 23/431 (5%) Strand=Plus/Plus Query 1154 ACGAAGACTACCTTCGACGAGAAAAGCTTCTGGCGGAAGAAGATGAGGCAGTGGAAGGAC 1213 |||||||||||||||||| |||||| | |||| |||||||||||| |||||||||||| Sbjct 8 ACGAAGACTACCTTCGACAAGAAAACCGTCTGATAGAAGAAGATGAGACAGTGGAAGGAC 67 Query 1214 TTGATAAAACTCCTG-TT----TT-TGTTGAGGACCTTGGGGTAAGGAAAAAGACGCTCT 1267 ||||| | ||||| | || || | ||||||| ||| ||||| ||||||||||||| Sbjct 68 TTGATGAGACTCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGACGCTCT 127 Query 1268 TTGTTGCCAATCTCTATCACAAAACTAG-ACTATCACATATCATCAGTTTCTTCAAAGAT 1326 || ||||||||||| | |||| | | | | |||||||||||| |||||||| |||| Sbjct 128 TTATTGCCAATCTCCCTTTGAAAAGT-GAAATGCCACATATCATCAATTTCTTCAGAGAT 186 Query 1327 GTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGGGCTGT 1386 ||||||||||||||| |||||||||||||||||||||||| | || ||| | |||||||| Sbjct 187 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTGGGCTGT 246 Query 1387 GGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGC---TAGAAACGAAGATT 1443 ||||||||||||||||||||| ||||| ||||||||||||||| | |||| ||||| Sbjct 247 GGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGAAGAAC 306 Query 1444 AGTAAAGCATTAATG-GGTCAAT--TTAT-TT-TTCTTGACGTGGCTGAGATACCTCTAT 1498 ||| | | | || || ||| |||| || |||||||||||||||||||| ||| || Sbjct 307 C-TAA-GAAG-ATTGCGG--AATCGTTATGTTGTTCTTGACGTGGCTGAGATAGCTCCAT 361 Query 1499 GCCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTTA-AC 1557 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 362 ACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTTCGAG 421 Query 1558 CAAGAAAGCCT 1568 |||||||||| Sbjct 422 -AAGAAAGCCT 431 Score = 243 bits (131), Expect = 6e-63 Identities = 265/327 (81%), Gaps = 19/327 (6%) Strand=Plus/Plus Query 484 CTCTTTGTTACCAATCTCTCTCCCCAAACTAAAATATCAGATATCATGC-ATTTCTTCAA 542 |||||| || |||||||| || ||| | |||| || ||||||| | ||||||||| Sbjct 124 CTCTTTATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCAT-CAATTTCTTCAG 182 Query 543 AAACGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA-TGTGGGCAAGCATGTGG 601 | | ||||||||||||||||||||||||||||||||| |||| | ||| |||||||||| Sbjct 183 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAG-GGGTAAGCATGTGG 241 Query 602 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAACATAGCAAAGATGGCTC---TGGAAGAGA 658 ||| ||||||||||||||||||||||||| ||| |||||||| ||| | ||||| ||| Sbjct 242 GCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGA 301 Query 659 TGCA--TGGTGAATATTTGCTTGA-TCAT-ATGATTTTTCTTCATGTGGCTAAGGCAGCT 714 | | | ||| ||| || || || | ||| || ||||| | |||||| || |||| Sbjct 302 AGAACCTAA-GAAGATT-GCG-GAATCGTTATG-TTGTTCTTGACGTGGCTGAGATAGCT 357 Query 715 CCATACCCTC-CACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACCT 773 |||||||||| | ||||||||||||||||||||||||| |||||| ||||| |||||||| Sbjct 358 CCATACCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCT 416 Query 774 TCGACGTGGAA-GCCTTCTGATAGAAG 799 |||| | ||| ||||| ||||||||| Sbjct 417 TCGA-GAAGAAAGCCTTTTGATAGAAG 442 > AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:3394009-3397526 FORWARD LENGTH=1272 Length=1272 Score = 217 bits (117), Expect = 3e-55 Identities = 206/247 (83%), Gaps = 13/247 (5%) Strand=Plus/Plus Query 451 GATGAGACACCT--C-ACGATTTTGTTGAGCAAGTACTCTTTGTTACCAATCTCTCTCCC 507 |||||||||||| | |||||||| |||| |||| ||||||||| |||||||||| ||| Sbjct 349 GATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCTCCCCC 408 Query 508 CAAACTAAAATATCAGATATCATGC-ATTTCT-TCAAAAACGTTGGAGAAGTTGTTAGTG 565 |||||||| |||| ||||||| | | ||||| || || | ||||||||||||||||||| Sbjct 409 CAAACTAAGATATTAGATATC-TTCGGTTTCTGTC-AAGATGTTGGAGAAGTTGTTAGTG 466 Query 566 TTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTT 625 |||||||||||| |||||||| || ||||| |||||||| || ||||||||||||| ||| Sbjct 467 TTCGACTTATTGCAAACCATGAGGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT-CTT 525 Query 626 -CTGCTAAC-ATAGCAAAGATGGCT-CTGGAAGAGATGCATGGTGAATATTTGCTTGATC 682 |||| ||| | |||||||| || | |||||| | | | ||||||||||||| | || || Sbjct 526 TCTGCCAACGA-AGCAAAGAAGG-TGCTGGAAAACAAGAATGGTGAATATTTTCATGGTC 583 Query 683 ATATGAT 689 ||| ||| Sbjct 584 ATAAGAT 590 Score = 95.3 bits (51), Expect = 2e-18 Identities = 200/266 (75%), Gaps = 33/266 (12%) Strand=Plus/Plus Query 129 AAAAAAGAAGCTCTTTGTTGA-CAATCTCTCTCCCGA-AATTAAAATGTCAAA-TATCAT 185 |||||||| ||| |||||| | ||||||| || || | || || || |||| || | Sbjct 885 AAAAAAGACGCTTTTTGTT-ACCAATCTCCCT-CCTAGAACTAGTAT-ACAAAGGAT-GT 940 Query 186 CG-ATTTCTT-CAAAAATGTTGGAAGAGTTGTTCGTGTTCAG-CTTATT-TTAGACCTCA 241 | ||||||| ||| | | || | | |||||||||||||| | |||||| || || | || Sbjct 941 TGTATTTCTTCCAAGACT-TT-G-A-AGTTGTTCGTGTTC-GACTTATTGTT-GA-C-CA 992 Query 242 A--GAATAAGC-TCGCGGGCTCTGGCT-TTGTTGAGTTTGCTTCTGCTAATGAAGCAGAG 297 | | ||||| | ||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 993 ATCGGGTAAGCAT-ATGGGCTGTGGCTATT-TTGAGTTTGCTTCTGCTAATGAAGCAGAG 1050 Query 298 AAGGTGGCGCTGGAAGAGAAGAACGGTGAATTTTTGCTCAATCGCAAGATTTTTATTGAA 357 |||| |||||||| ||| ||| ||| || ||||| | ||| ||| || ||| |||| Sbjct 1051 AAGG---CGCTGGAACAGAGGAATGGTAAAAGTTTGCGCTATCACAAAATCTTTCTTGA- 1106 Query 358 GCAC-CTAAGACT-GCTCCACTACCC 381 || || ||| | |||||| ||||| Sbjct 1107 GCTGGCTGAGA-TAGCTCCA-TACCC 1130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83182303065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5