BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891335
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 665 0.0
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 647 0.0
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 479 4e-134
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 473 2e-132
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 375 5e-103
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 217 3e-55
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 665 bits (360), Expect = 0.0
Identities = 598/711 (84%), Gaps = 24/711 (3%)
Strand=Plus/Plus
Query 847 TTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACAAA 906
|||||||||||||||| | |||| ||||||||||| ||| ||||| |||||| | ||||
Sbjct 1334 TTTGTTGAGGCAGTTGGCGTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCACGCAAA 1393
Query 907 ACT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATATTCG 965
||| ||| | | || || || ||||||||||||||||||||||||||||||||| ||||
Sbjct 1394 ACTGAAA-TAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCG 1452
Query 966 ACTTATTGTAGACCATA-AGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTCTG 1024
|||||| || |||| | ||| ||||| |||||||| || |||||| | ||||| |||||
Sbjct 1453 GCTTATTCTAAACCACACAGG-CAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTCTG 1511
Query 1025 CTAACGAAGCAAAGAAGGCACTAGAAAAGAAGAACGGTGAATATTTGCACGATCGCAAGA 1084
||||||||||||||| ||| | |||| ||| ||||||||||||||| ||||| ||||||
Sbjct 1512 CTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACGATTGCAAGA 1571
Query 1085 TTTCTCTTGGAGAGGCTACGATAGCTCCATACCCTACACCAAAGTATTGCATAGATCACA 1144
||| ||||| || ||||| ||| | |||||||||| |||| |||||||||||| ||||||
Sbjct 1572 TTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTCCACCCAAGTATTGCATACATCACA 1631
Query 1145 AGGTTTGGAACGAAGACTACCTTCGACGAGAAAAGC-TTCTGGCGGAAGAAGATGAGGCA 1203
|||||||| |||||||||||||||||||||||| || ||||| |||||| ||||| ||
Sbjct 1632 AGGTTTGGTACGAAGACTACCTTCGACGAGAAA-GCCTTCTGATAGAAGAAAATGAGACA 1690
Query 1204 GTGGAAGGACTTGATAAAACTCCTGTTTTTGTTGAGGACCTTGGGGTAAGGAAAAAGACG 1263
| ||||||||||||| | ||||| | | |||||||||| ||| ||||| |||||||||
Sbjct 1691 GAGGAAGGACTTGATGACACTCCCGCTCTTGTTGAGGAATTTGCCGTAAGAAAAAAGACG 1750
Query 1264 CTCTTTGTTGCCAATCTCT-ATCACAAAACTAGACTATCACATATCATCA-GTTTCTTCA 1321
||||||||||||||||||| | | || ||||| | ||||||||||||||| |||| || |
Sbjct 1751 CTCTTTGTTGCCAATCTCTCACC-CAGAACTAAAATATCACATATCATCAAGTTTTTT-A 1808
Query 1322 AAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGG 1381
||||||||| |||||||||| ||||||||||||||||| |||||| | |||||| | |||
Sbjct 1809 AAGATGTTGCAGAAGTTGTTCGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGG 1868
Query 1382 GCTGTGGCTTTGTTGAGTTTGCTTCTTCTTA-CGAAGCAAAGAAGGCGCTAG-AAACGAA 1439
|||||||||||||||||||||||||| ||| ||||||| |||||||||| | ||| ||
Sbjct 1869 GCTGTGGCTTTGTTGAGTTTGCTTCTG-TTAACGAAGCACAGAAGGCGCT-GCAAAAGAT 1926
Query 1440 GATTAGT-AAAGCATTAATGGGTCAATT-T-A--TTTTTCTTGACGTGGCTGAGATACCT 1494
|| | || ||| ||| || | || | | | ||||||||||||||| |||| || ||
Sbjct 1927 GAATGGTGAAA--ATT--TGCG-CAGTCGTGAGATTTTTCTTGACGTGGTTGAGTTAGCT 1981
Query 1495 CTATGCCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAA 1545
| || ||||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 1982 CCATACCCTCTCCGACCCAAGTACAACCATGCAGAGAAACTTTGGCACGAA 2032
Score = 636 bits (344), Expect = 0.0
Identities = 591/708 (83%), Gaps = 26/708 (4%)
Strand=Plus/Plus
Query 112 AAGGAAGCTGCCGTAACAAAAAAGAAGCTCTTTGTTGACAATCTCTCTCCCGAAATTAAA 171
||||||||||| |||| | | |||| ||||||||||| ||||||| || |||| ||||
Sbjct 620 AAGGAAGCTGCAGTAAGAGAGAAGACGCTCTTTGTTGCCAATCTCCCTTATGAAACTAAA 679
Query 172 ATGTCAAATATCATCGATTTCTTCAAAAATGTTGGAAG-AGTTGTTCGTGTTCAGCTTAT 230
|| ||||||||||||||||||||||||| ||||| || ||||||||||||||| |||||
Sbjct 680 ATACCAAATATCATCGATTTCTTCAAAAAGGTTGG-AGAAGTTGTTCGTGTTCAACTTAT 738
Query 231 TTTAGACCTCAAGAATAAGCTCGCGGGCTCTGGCTTTGTTGAGTTTGCTTCTGCTAATGA 290
| || |||||||| |||||| | ||| | ||||||||||||||||||||||| ||||||
Sbjct 739 TGTAAACCTCAAGGGTAAGCTTGTGGGTTGTGGCTTTGTTGAGTTTGCTTCTGTTAATGA 798
Query 291 AGCAGAGAAGGTGGCGCTGGAAGAGAAGAACGGTGAAT-TTTTGCTCAATCGCAAGATTT 349
||| || ||| ||||||| || ||||||||||||||| ||| | |||| |||||||
Sbjct 799 AGC--AG-AGGAGGCGCTGCAAAAGAAGAACGGTGAATGTTTAG-ACAATAATAAGATTT 854
Query 350 TTATTGA---AGC-ACCTAAG--A-CTGC-T-CC-ACTACCCAAGTATTGCATAGATCAC 399
|| |||| || | |||| | || | | || | ||||||||||||||||||||||
Sbjct 855 TTCTTGATGTGGCTA-ATAAGAAAGCTACATACCTTCCACCCAAGTATTGCATAGATCAC 913
Query 400 AAGGTTTGGTATGAAGACTACCTTCGACGAGAACGCCTTCCCATTGATGATGATGAGACA 459
||||||||| | ||||||||| | ||| |||| ||| ||| || || || ||||||| |
Sbjct 914 AAGGTTTGGGACAAAGACTACCGTAGACTAGAAAGCCATCCAATAGAAGAAGATGAGAGA 973
Query 460 CCTCACGATTT-TGTTGAGCAAGTACTCTTTGTTACCAATCTCTCTCCCCAAACTAAAAT 518
|||| | | || ||||||| |||||||||||||| ||||||| ||||| |||||||||||
Sbjct 974 CCTC-CTAATTCTGTTGAGGAAGTACTCTTTGTTGCCAATCTTTCTCCTCAAACTAAAAT 1032
Query 519 ATCAGATATCAT-GCATTTCTTCAAAAACGTTGGAGAAGTTGTTAGTGTTCGACTTATTG 577
|||||||||| | | |||||||||| |||||||||||||| ||| |||||||||| |
Sbjct 1033 ATCAGATATCTTCG-ATTTCTTCAATTGTGTTGGAGAAGTTGTAAGTATTCGACTTATGG 1091
Query 578 TAAACCATGTGGGCAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC-ATA 636
||||||||| || ||||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 1092 TAAACCATGAAGGTAAGCATGTGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAA 1151
Query 637 GCAAAGATGGCTCTGGAAGAG-ATGCATGGTGAATATTTGCTTGATCATATGATTTTTCT 695
|||| | ||| ||||| || | | ||||||||||||||| ||||||| ||||||| |
Sbjct 1152 -CAAAAAAGGCACTGGA-GAACAAGAATGGTGAATATTTGCACGATCATAAGATTTTTAT 1209
Query 696 TCATGTGGCTAAGGCAGCTCCATACCCTCCACGACCCAAGTACAACCTTGCAGAGATGCT 755
| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 1210 TGATGTGGCTAAGACAGCTCCATACCCTCCAGGACCCAAGTACAACCTTGTAGAGAAGCT 1269
Query 756 TTGTTACGAGGACTACCTTCGACGTGGAAGCCTTCTGATAGAAGAAGA 803
||||||||| |||||||||||||| | |||||||| |||||| |||||
Sbjct 1270 TTGTTACGAAGACTACCTTCGACGAGAAAGCCTTCCGATAGATGAAGA 1317
Score = 364 bits (197), Expect = 1e-99
Identities = 547/707 (77%), Gaps = 60/707 (8%)
Strand=Plus/Plus
Query 883 TTTATTGCCAATCTCTGT-CACAAAACTAAACCATCACACAT-TATCAATTTCTTCAA-A 939
||| |||||||||| | | | | |||||||| |||| | || | || ||||||||||
Sbjct 1001 TTTGTTGCCAATCTTTCTCCTC-AAACTAAAATATCAGATATCT-TCGATTTCTTCAATT 1058
Query 940 GATGTTGGAGAAGTTGTTCA-TATTCGACTTATTGTAGACCAT-AAGGGCAAGCTTGTGG 997
| |||||||||||||| | | |||||||||||| ||| ||||| || || |||| |||||
Sbjct 1059 G-TGTTGGAGAAGTTG-TAAGTATTCGACTTATGGTAAACCATGAA-GGTAAGCATGTGG 1115
Query 998 GCTATGGCTTTGTTGTGTTTGCTTCTGCTAACGAAGCAAAGAAGGCACTAGAAAAGAAGA 1057
| ||||||||||||| ||||||||||||| ||||| |||| |||||||| || || ||||
Sbjct 1116 GTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTGGAGAACAAGA 1175
Query 1058 ACGGTGAATATTTGCACGATCGCAAGATTTCTCTTGGA-GAGGCTACGATAGCTCCATAC 1116
| ||||||||||||||||||| ||||||| | || || | ||||| || ||||||||||
Sbjct 1176 ATGGTGAATATTTGCACGATCATAAGATTTTTATT-GATGTGGCTAAGACAGCTCCATAC 1234
Query 1117 CCT--A-CACCAAAGTATTGCATAGAT-CACAAGGTTTGGAACGAAGACTACCTTCGACG 1172
||| | ||| ||||| | | | | | ||| |||| |||||||||||||||||||
Sbjct 1235 CCTCCAGGACCCAAGTACAACCTTG-TAGAGAAGCTTTGTTACGAAGACTACCTTCGACG 1293
Query 1173 AGAAAAG-CTTCTGGCGGAAGAAGATGAGGCAGTGGAAGGACTTGATAAAACTCCTGTTT 1231
|| |||| |||| | ||| | | | | ||| || ||| | | |||||| |
Sbjct 1294 AG-AAAGCCTTC---C-------GAT-A-G-A-T-GAA-GA--TGAGACACCTCCTGAAT 1334
Query 1232 TTGTTGAGGAC-CTTGGGGTAAGGAAAAAGACGCTCTTTGTTGCCAATCTCT-ATCACAA 1289
||||||||| | |||| ||||||||||||||||||||||||||| |||||| | | |||
Sbjct 1335 TTGTTGAGG-CAGTTGGCGTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCA-CGCAA 1392
Query 1290 AACT-AGACTATCACATATCATCAGTTTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTC 1348
|||| | | || | |||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 1393 AACTGAAA-TAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTC 1451
Query 1349 GACTTATTGTAGACCACATGAGTG-A-GCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTC 1406
| |||||| || |||||| || | | || | ||||||||| |||||| ||||||| |||
Sbjct 1452 GGCTTATTCTAAACCACAC-AG-GCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTC 1509
Query 1407 TTCTTACGAAGCAAAGAAGGCGCTAGAAACGAAGATTAGTAAAGCATT--AATGGGT-CA 1463
| || |||||||||||| |||| | |||||||| | || || ||| || | | ||
Sbjct 1510 TGCTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAAT-ATTTGAACGATTGCA 1568
Query 1464 ATTTATTTTTCTTGACGTGGCTGAGATACCTCTATGCCCTCTCCGACCCAAGTACAACCT 1523
| ||||||||||| |||||| |||| || || ||||| | ||||||||| | |
Sbjct 1569 AG--ATTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTC-C--ACCCAAGTATTGCAT 1623
Query 1524 TGCAG-AGAAGCTTTGGTACGAAGACTACCTTA-ACCAAGAAAGCCT 1568
|| | ||| |||||||||||||||||||| || | ||||||||
Sbjct 1624 A-CATCACAAGGTTTGGTACGAAGACTACCTTCGACGA-GAAAGCCT 1668
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 647 bits (350), Expect = 0.0
Identities = 575/680 (85%), Gaps = 30/680 (4%)
Strand=Plus/Plus
Query 371 CTCCACTACCCAAGTATTGCATAGATCACAAGGTTTGGTATGAA-GACTACCTTCGACGA 429
||||| || |||||||||||||||| ||| |||||| || || |||||||||| ||||
Sbjct 28 CTCCAGGACTCAAGTATTGCATAGATTACACGGTTTGCTA-CAACGACTACCTTCAACGA 86
Query 430 GAACGCCTTCCCATTGATGATGATGAGACACC-TCACGATTTTGTTGAGCAAGTACTCTT 488
||| ||||||| || || || |||||||||| || ||||||||||||| |||||||||
Sbjct 87 GAAAGCCTTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTA 145
Query 489 TGTTACCAATCTCTCTCCCCAAACTAAAATATCAG-ATATC-ATGCATTTCTTCAAAAAC 546
|||| ||||||||||||||||||||||||||| | || || | | | ||||||||| |
Sbjct 146 TGTTGCCAATCTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAG-AATTCTTCAAAGAT 203
Query 547 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTAT 606
|||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 204 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA-------A-GCATGTGGGCTAT 255
Query 607 GGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGATGGCTCTGGAAGAGATGCATGG 665
||||||||||| ||||||||| ||||| | |||||||| ||| ||| || ||| | ||||
Sbjct 256 GGCTTTGTTGACTTTGCTTCTTCTAACGA-AGCAAAGAAGGCGCTGCAAAAGAAGAATGG 314
Query 666 TGAATATTTGCTTGATCAT-ATGATTTTTCTTCATGTGGCTAAGGCAGCTCCATACCCTC 724
||||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||
Sbjct 315 TGAATATTTGCATGATCATCA-GATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTA 373
Query 725 CACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACCTTCGACGTGGAA 784
||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 374 CACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAA 433
Query 785 GCCTTCTGATAGAAGAAGAAGAAGATGTGTCAGTGGAAGGACCTGATGAAAGTCCTAAGC 844
|||| |||||||| |||| || || | |||||||||||| |||||||| ||| ||
Sbjct 434 ACCTTGTGATAGAATAAGATGA-GACA-G-CAGTGGAAGGACTTGATGAAACTCCCAA-- 488
Query 845 CTTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACA 904
|||||||||||||||||| |||||||||||||||| ||| || || ||||| || |
Sbjct 489 -TTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CG 546
Query 905 AAA-CT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATAT 962
|| || ||| |||| | || ||||||||||||||||| |||||| ||||||| ||| |
Sbjct 547 GAAGCTCAAAT-ATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGT 605
Query 963 TCGACTTATTGTAGACCATAAGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTC 1022
|||||||||||||||| | | |||| ||| ||||||| |||||||||||| |||||||||
Sbjct 606 TCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGATGGCTTTGTTGAGTTTGCTTC 665
Query 1023 TGCTAACGAAGCAAAGAAGG 1042
||||||||||||| ||||||
Sbjct 666 TGCTAACGAAGCAGAGAAGG 685
Score = 220 bits (119), Expect = 3e-56
Identities = 241/297 (81%), Gaps = 20/297 (7%)
Strand=Plus/Plus
Query 1264 CTCTTTGTTGCCAATCTCTATCACAAAACTAGACTATCACATATCATCAG-TTTCTTCAA 1322
|||| |||||||||||||| || | |||||| | ||| ||| ||| || ||||||||
Sbjct 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199
Query 1323 AGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGGG 1382
||||||||||||||||||| ||||||||||||||||| | || | ||| | ||||
Sbjct 200 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTA-A--AC--CA---AGCATGTGGG 251
Query 1383 CTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTAG-AAACGAAGA 1441
|| |||||||||||| |||||||||||| ||||||||||||||||||| | ||| |||||
Sbjct 252 CTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCT-GCAAAAGAAGA 310
Query 1442 TTAGTAAAGCA-TT-AATGGGTCAAT-TTATTTTTCTTGACGTGGCTGAGATACCTCTAT 1498
| || || | || || | || || ||||||||| | |||||| ||| | ||| ||
Sbjct 311 ATGGTGAA-TATTTGCAT-GATC-ATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCAT 367
Query 1499 GCCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTT 1554
|||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 368 ACCCT-ACACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTT 423
Score = 163 bits (88), Expect = 5e-39
Identities = 139/163 (85%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 484 CTCTTTGTTACCAATCTCTCTCCCCAAACTAAAATATCAGATATCATGC-ATTTCTTCAA 542
||||||||| || ||||||||| || || |||||||||||||||| | ||||||||||
Sbjct 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCAT-CAATTTCTTCAA 581
Query 543 AAACGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGG 601
| |||||||| |||||| || |||||||||||||||| || | |||| |||||||||
Sbjct 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGG 640
Query 602 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGA 643
|| ||||||||||||||||||||||||||||| | |||| |||
Sbjct 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGA-AGCAGAGA 682
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 479 bits (259), Expect = 4e-134
Identities = 432/514 (84%), Gaps = 17/514 (3%)
Strand=Plus/Plus
Query 533 ATTTCTTCAAAAACGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGTGGGCA 592
|||||||||| | |||||||||||||||||||||||||||||||||| || | | | |
Sbjct 2219 ATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGTA 2278
Query 593 AGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACATAGCAAAGATGGCTCTGG 652
||||||||||||||||||||||||||||||||||| || | ||||||| ||||| ||||
Sbjct 2279 AGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGG 2338
Query 653 AAGAGATGCATGGTGAATATTTGCTTGATCATATGATTTTTCTTCATGTGGCTAAGGCAG 712
|| ||| | ||||||||||||||| ||||||| |||||||||| |||||||||| |||
Sbjct 2339 AAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAG 2398
Query 713 CTCCATACCCTCCACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACC 772
|||| |||||||||||| |||||||||||||||||||| |||||| ||||| ||||| |
Sbjct 2399 CTCCGTACCCTCCACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTATC 2458
Query 773 TTCGACGTGGA-AGCCTTCTGATAGAAGAAGAAGAAGATGTGTCAGTGGAAGGACCTGAT 831
||| ||| | | |||||||||||||||||||| || || |||||||||||| ||||
Sbjct 2459 TTCTACGAG-ATAGCCTTCTGATAGAAGAAGATGA-GA-----CAGTGGAAGGACTTGAT 2511
Query 832 GAAAGTCCTAAGCCTTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCT-ATTTATTGC 890
|||| ||||| | || |||||||||||||||| ||||| ||||| ||| ||| |||||
Sbjct 2512 GAAACTCCTA-G--TTGTGTTGAGGCAGTTGCCTTAAGAGAAAAGGTGCTCATT-ATTGC 2567
Query 891 -CAATCTCTGTCACAAAACTAAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAG 949
|| | || || | ||| ||| |||||| || ||| ||||||||||||||| ||||
Sbjct 2568 GCA-TGTCCCTCGCCGAACAAAAATATCACATATCATCGATTTCTTCAAAGATGCTGGAC 2626
Query 950 AAGTTGTTCATATTCGACTTATTGTAGACCATAAGGGCAAGC-TTGTGGGCTATGGCTTT 1008
|||||||| || | ||||||||||||||||| |||||||||| || ||| | |||||||
Sbjct 2627 AAGTTGTTAATGTCCGACTTATTGTAGACCAAAAGGGCAAGCCTTTTGGCCG-TGGCTTT 2685
Query 1009 GTTGTGTTTGCTTCTGCTAACGAAGCAAAGAAGG 1042
|||| |||| |||||||| |||||||||||||||
Sbjct 2686 GTTGAGTTTACTTCTGCTGACGAAGCAAAGAAGG 2719
Score = 185 bits (100), Expect = 1e-45
Identities = 200/247 (81%), Gaps = 12/247 (5%)
Strand=Plus/Plus
Query 1314 TTTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGT-AGACCAC-ATGAGT 1371
||||||||| |||||||||||||||||| |||||||||||||||| || || | | ||||
Sbjct 2220 TTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAG-CCCCGA-GAGT 2277
Query 1372 GAGCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTA 1431
||| | |||||| |||||||||||||||||||||| ||| | |||||| | ||||||
Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTG 2337
Query 1432 GAAACGAAGATTAGTAAAGCA-TT-AATGGGTCAAT-TTATTTTTCTTGACGTGGCTGAG 1488
|||| ||||| | || || | || | | || || |||||||||| |||||| ||
Sbjct 2338 GAAAAGAAGAATGGTGAA-TATTTGCA-CGATC-ATAAGATTTTTCTTGGTGTGGCTAAG 2394
Query 1489 ATACCTCTATGCCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGA 1547
| | ||| | ||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2395 ACAGCTCCGTACCCTC-CACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGA 2453
Query 1548 CTACCTT 1554
||| |||
Sbjct 2454 CTATCTT 2460
Score = 108 bits (58), Expect = 2e-22
Identities = 163/212 (77%), Gaps = 14/212 (7%)
Strand=Plus/Plus
Query 867 AAGAAAAAAGACG--CTATTTATTGCCAATCTCTGTCACAAAACTAAACCAT--CACACA 922
||||||||||||| |||| | ||| | |||| || | | |||||| || || | |
Sbjct 1803 AAGAAAAAAGACGCTCTATGT-TTG-CTGTCTCCCTCGCGACACTAAA--ATGCCAGATA 1858
Query 923 TTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TATTCGACTTATTGTAGACCAT 981
| ||| |||||||||||||||||||| |||||||| | | ||| ||||| | | | |
Sbjct 1859 TCATCGATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTACTACAAAACGC 1917
Query 982 AAGGGCAAGC-TTGTGGGCTA-TGGCTTTGTTGTGTTTGCTTCTGCTAACGAAGCAAAGA 1039
|| || || || | | | | |||||| |||| ||||||||||||||||||||||||||
Sbjct 1918 AACGGTTTGCGTT-T-GTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAAAGA 1975
Query 1040 AGGCACTAGAAAAGAAGAACGGTGAATATTTG 1071
|||| || || | |||||| ||||||||||||
Sbjct 1976 AGGCGCTGGATATGAAGAATGGTGAATATTTG 2007
Score = 58.4 bits (31), Expect = 2e-07
Identities = 36/38 (95%), Gaps = 2/38 (5%)
Strand=Plus/Plus
Query 72 CAAACCGATTCTGAAGAAACATAAGGAAAAATTC-GAG 108
|||||||||||||||||||||||||||||| ||| |||
Sbjct 1605 CAAACCGATTCTGAAGAAACATAAGGAAAA-TTCCGAG 1641
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 473 bits (256), Expect = 2e-132
Identities = 575/723 (80%), Gaps = 46/723 (6%)
Strand=Plus/Plus
Query 846 TTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACAA 905
||||| ||||| || |||||| | | |||| ||||| ||| ||||||||||| || ||
Sbjct 714 TTTTGCTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCAATCTCCGTGACTC 770
Query 906 AACT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATATTC 964
| | | | |||| | || |||||||||||||||||||||||||||||||||||| |||
Sbjct 771 CATTCAGA-TATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTC 829
Query 965 GACTTATTGTAGACCATA-AGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTCT 1023
||||||||||| || | |||| |||| || ||||| || ||||||| ||||||||||
Sbjct 830 GACTTATTGTAAAC-AGCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCT 888
Query 1024 GCTAACGAAGCAAAGAAGGCACTAGAAAAGAAGAACGGTGAATATTTGCACGATCGCAAG 1083
|||||||||||| ||||||| || | |||||| |||||||||||||||| || ||||
Sbjct 889 GCTAACGAAGCAGAGAAGGCGCTGGTAAAGAA---CGGTGAATATTTGCACAATTACAAG 945
Query 1084 ATTTCTCTTGGA-G-AGGCTACGATAGCTCCATACCCTACACCAAAGTATTGCATAGATC 1141
|||||||||| | | || ||| || ||||||| ||| | |||| |||| |||| ||||||
Sbjct 946 ATTTCTCTTG-ACGGAG-CTAAGACAGCTCCACACCGTCCACCCAAGTTTTGCCTAGATC 1003
Query 1142 ACAAGGTTTGGAACGAAGACTACCTTCGACGAGAAAAGC-TTCTGGCGGAAGAAGATGAG 1200
||||||||||| ||||||||||||||||| |||| | || |||| |||||| ||||
Sbjct 1004 ACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAGA-GCCTTCTCATTAAAGAAGTTGAG 1062
Query 1201 GCAGTGGAAGGACTTGATAAAACTCCTGTTTTTGTTGAGGACCTTGGGGTAAGGAAAAAG 1260
| |||||||||||||||| ||||||||| |||| ||||||| ||| | ||| |||||
Sbjct 1063 GGAGTGGAAGGACTTGATGAAACTCCTGATTTTCTTGAGGAAGTTGCTGCAAGAAAAAAT 1122
Query 1261 AC-GCTCTTTGTTGCCAATCTCTATCACAAAACTAGACTA-TC--AC-A--TATCATCAG 1313
|| | | ||||| ||||||||| | |||| | | ||| | || | ||||||||
Sbjct 1123 ACAGTT-TTTGTCGCCAATCTCCCTTACAACTGTCGTCTAATAGTACCAACTATCATCAA 1181
Query 1314 TTTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGA 1373
|||||||| |||||||||||| ||||| | ||||| ||||||||||||||||| ||||
Sbjct 1182 TTTCTTCAGTGATGTTGGAGAAATTGTTCATATTCGAATTATTGTAGACCACATGGGTGA 1241
Query 1374 GCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTAGA 1433
|| | |||||||||||||||| |||||| |||||| |||||||| |||||||||| |
Sbjct 1242 GCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAACGAAGCAGAGAAGGCGCT-GC 1300
Query 1434 AACGAAGATTAGTAAAGCATTAATGGGTCAATTTATTTTTCTTGACGTGGCTGAGATACC 1493
|| |||| || | | | || | || |||| | ||||||||||||||||| |
Sbjct 1301 AA--AAGA--AG-A---C-T----GG-T-AAG--ATTTCTGTTGACGTGGCTGAGATAGC 1343
Query 1494 T-CTATGCCCTCTCCGACCCAAGTACAACCTTGC-AGAGAAGCTTTGGTACGAAGACTAC 1551
| | || |||| | |||||||||||||| |||| | |||||||||||||||||||| ||
Sbjct 1344 TTC-ATACCCTGTTGGACCCAAGTACAACGTTGCTA-AGAAGCTTTGGTACGAAGACAAC 1401
Query 1552 CTT 1554
|||
Sbjct 1402 CTT 1404
Score = 156 bits (84), Expect = 8e-37
Identities = 148/178 (83%), Gaps = 7/178 (4%)
Strand=Plus/Plus
Query 1256 AAAAGACGCTCTTTGTTGCCAATCTCTATCACAAAACT-AGACTATCACATATCATCAGT 1314
|||| ||||||||||||||||||||| | || | | ||| ||||| ||||||||| |
Sbjct 738 AAAA-ACGCTCTTTGTTGCCAATCTCCGTGACTCCATTCAGA-TATCAGATATCATCAAT 795
Query 1315 TTCTTCAAAGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCA-C-ATGAGTG 1372
||||||||||||||||||||||||||| |||||||||||||||| || | | | | |
Sbjct 796 TTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCCAGG-GAA 853
Query 1373 AGCGTTTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCT 1430
||| | |||||| || |||||||||||||||||| || |||||||| ||||||||||
Sbjct 854 AGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCT 911
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 375 bits (203), Expect = 5e-103
Identities = 359/431 (83%), Gaps = 23/431 (5%)
Strand=Plus/Plus
Query 1154 ACGAAGACTACCTTCGACGAGAAAAGCTTCTGGCGGAAGAAGATGAGGCAGTGGAAGGAC 1213
|||||||||||||||||| |||||| | |||| |||||||||||| ||||||||||||
Sbjct 8 ACGAAGACTACCTTCGACAAGAAAACCGTCTGATAGAAGAAGATGAGACAGTGGAAGGAC 67
Query 1214 TTGATAAAACTCCTG-TT----TT-TGTTGAGGACCTTGGGGTAAGGAAAAAGACGCTCT 1267
||||| | ||||| | || || | ||||||| ||| ||||| |||||||||||||
Sbjct 68 TTGATGAGACTCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGACGCTCT 127
Query 1268 TTGTTGCCAATCTCTATCACAAAACTAG-ACTATCACATATCATCAGTTTCTTCAAAGAT 1326
|| ||||||||||| | |||| | | | | |||||||||||| |||||||| ||||
Sbjct 128 TTATTGCCAATCTCCCTTTGAAAAGT-GAAATGCCACATATCATCAATTTCTTCAGAGAT 186
Query 1327 GTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGGGCTGT 1386
||||||||||||||| |||||||||||||||||||||||| | || ||| | ||||||||
Sbjct 187 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTGGGCTGT 246
Query 1387 GGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGC---TAGAAACGAAGATT 1443
||||||||||||||||||||| ||||| ||||||||||||||| | |||| |||||
Sbjct 247 GGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGAAGAAC 306
Query 1444 AGTAAAGCATTAATG-GGTCAAT--TTAT-TT-TTCTTGACGTGGCTGAGATACCTCTAT 1498
||| | | | || || ||| |||| || |||||||||||||||||||| ||| ||
Sbjct 307 C-TAA-GAAG-ATTGCGG--AATCGTTATGTTGTTCTTGACGTGGCTGAGATAGCTCCAT 361
Query 1499 GCCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTTA-AC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 ACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTTCGAG 421
Query 1558 CAAGAAAGCCT 1568
||||||||||
Sbjct 422 -AAGAAAGCCT 431
Score = 243 bits (131), Expect = 6e-63
Identities = 265/327 (81%), Gaps = 19/327 (6%)
Strand=Plus/Plus
Query 484 CTCTTTGTTACCAATCTCTCTCCCCAAACTAAAATATCAGATATCATGC-ATTTCTTCAA 542
|||||| || |||||||| || ||| | |||| || ||||||| | |||||||||
Sbjct 124 CTCTTTATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCAT-CAATTTCTTCAG 182
Query 543 AAACGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA-TGTGGGCAAGCATGTGG 601
| | ||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||
Sbjct 183 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAG-GGGTAAGCATGTGG 241
Query 602 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAACATAGCAAAGATGGCTC---TGGAAGAGA 658
||| ||||||||||||||||||||||||| ||| |||||||| ||| | ||||| |||
Sbjct 242 GCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGA 301
Query 659 TGCA--TGGTGAATATTTGCTTGA-TCAT-ATGATTTTTCTTCATGTGGCTAAGGCAGCT 714
| | | ||| ||| || || || | ||| || ||||| | |||||| || ||||
Sbjct 302 AGAACCTAA-GAAGATT-GCG-GAATCGTTATG-TTGTTCTTGACGTGGCTGAGATAGCT 357
Query 715 CCATACCCTC-CACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACCT 773
|||||||||| | ||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 358 CCATACCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCT 416
Query 774 TCGACGTGGAA-GCCTTCTGATAGAAG 799
|||| | ||| ||||| |||||||||
Sbjct 417 TCGA-GAAGAAAGCCTTTTGATAGAAG 442
> AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=1272
Length=1272
Score = 217 bits (117), Expect = 3e-55
Identities = 206/247 (83%), Gaps = 13/247 (5%)
Strand=Plus/Plus
Query 451 GATGAGACACCT--C-ACGATTTTGTTGAGCAAGTACTCTTTGTTACCAATCTCTCTCCC 507
|||||||||||| | |||||||| |||| |||| ||||||||| |||||||||| |||
Sbjct 349 GATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCTCCCCC 408
Query 508 CAAACTAAAATATCAGATATCATGC-ATTTCT-TCAAAAACGTTGGAGAAGTTGTTAGTG 565
|||||||| |||| ||||||| | | ||||| || || | |||||||||||||||||||
Sbjct 409 CAAACTAAGATATTAGATATC-TTCGGTTTCTGTC-AAGATGTTGGAGAAGTTGTTAGTG 466
Query 566 TTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTT 625
|||||||||||| |||||||| || ||||| |||||||| || ||||||||||||| |||
Sbjct 467 TTCGACTTATTGCAAACCATGAGGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT-CTT 525
Query 626 -CTGCTAAC-ATAGCAAAGATGGCT-CTGGAAGAGATGCATGGTGAATATTTGCTTGATC 682
|||| ||| | |||||||| || | |||||| | | | ||||||||||||| | || ||
Sbjct 526 TCTGCCAACGA-AGCAAAGAAGG-TGCTGGAAAACAAGAATGGTGAATATTTTCATGGTC 583
Query 683 ATATGAT 689
||| |||
Sbjct 584 ATAAGAT 590
Score = 95.3 bits (51), Expect = 2e-18
Identities = 200/266 (75%), Gaps = 33/266 (12%)
Strand=Plus/Plus
Query 129 AAAAAAGAAGCTCTTTGTTGA-CAATCTCTCTCCCGA-AATTAAAATGTCAAA-TATCAT 185
|||||||| ||| |||||| | ||||||| || || | || || || |||| || |
Sbjct 885 AAAAAAGACGCTTTTTGTT-ACCAATCTCCCT-CCTAGAACTAGTAT-ACAAAGGAT-GT 940
Query 186 CG-ATTTCTT-CAAAAATGTTGGAAGAGTTGTTCGTGTTCAG-CTTATT-TTAGACCTCA 241
| ||||||| ||| | | || | | |||||||||||||| | |||||| || || | ||
Sbjct 941 TGTATTTCTTCCAAGACT-TT-G-A-AGTTGTTCGTGTTC-GACTTATTGTT-GA-C-CA 992
Query 242 A--GAATAAGC-TCGCGGGCTCTGGCT-TTGTTGAGTTTGCTTCTGCTAATGAAGCAGAG 297
| | ||||| | ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 993 ATCGGGTAAGCAT-ATGGGCTGTGGCTATT-TTGAGTTTGCTTCTGCTAATGAAGCAGAG 1050
Query 298 AAGGTGGCGCTGGAAGAGAAGAACGGTGAATTTTTGCTCAATCGCAAGATTTTTATTGAA 357
|||| |||||||| ||| ||| ||| || ||||| | ||| ||| || ||| ||||
Sbjct 1051 AAGG---CGCTGGAACAGAGGAATGGTAAAAGTTTGCGCTATCACAAAATCTTTCTTGA- 1106
Query 358 GCAC-CTAAGACT-GCTCCACTACCC 381
|| || ||| | |||||| |||||
Sbjct 1107 GCTGGCTGAGA-TAGCTCCA-TACCC 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5