BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891336
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein |... 296 5e-80
> AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein
| chr4:11004517-11006788 FORWARD LENGTH=1248
Length=1248
Score = 296 bits (160), Expect = 5e-80
Identities = 205/225 (91%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 1 GCTGTTTGTCAGTTCGTAACTAACGTTAATATGAGCAATGGAAGGGTGCCTCTCCCAACT 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 683 GCTGTTTGTCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACT 742
Query 61 AACCGGCCAAATGGATCAGCTTGTCCCGGGACAATGCCCTCTACTTCAACTTCAACACCA 120
||||||||||||||| |||||||| || | |||||||| |||||||||||||||
Sbjct 743 AACCGGCCAAATGGAACAGCTTGT-CC----C----CCCTCTACATCAACTTCAACACCA 793
Query 121 CCCTCTCAGACCCAAACTGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGTGGAAAG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 794 CCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAG 853
Query 181 TTGGTGACCAATGTTGTTGTTGGTGTGACCACCGATAAAAAGTAA 225
||||||| ||||||||||||||| ||||| || || |||||||||
Sbjct 854 TTGGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAA 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5