BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891351
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37480.1 | Symbols: | unknown protein; Has 30201 Blast hits... 440 6e-123
> AT5G37480.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:14884331-14885969
REVERSE LENGTH=814
Length=814
Score = 440 bits (238), Expect = 6e-123
Identities = 400/474 (84%), Gaps = 27/474 (6%)
Strand=Plus/Plus
Query 49 TTTCTGGAAGTTTTTTGTGAAGTTTCTGGTAAGGAATACCGATTCACAACTGGTACAAAG 108
|||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||
Sbjct 219 TTTCTGGAGGTTTTTTGTGAAGTTTCTGGTAAAGACTACCGATTCACAACAGGGACAAAG 278
Query 109 GCGAAATTTGCTGTCTCTGTGATTAACAAGAAACTTGGTTCGTTAAAACCTAGAGTAG-T 167
||| | ||||||||||||||||| |||| ||||||||||||||| |||||| |||| | |
Sbjct 279 GCGGAGTTTGCTGTCTCTGTGATCAACAGGAAACTTGGTTCGTTGAAACCTCGAGT-GAT 337
Query 168 GTT-CATTGAAGCAGTAAAGGATGGTGAAGAGCCAATCAGTTTTGGTGATGATGCTTGTC 226
|| ||| ||||||| |||||| ||||||||||| || |||||||||||| ||||| |||
Sbjct 338 -TTACATCGAAGCAGCAAAGGAAGGTGAAGAGCCTATTAGTTTTGGTGATAATGCTAGTC 396
Query 227 TTGTCAATTACGGACATGGTTGGAAGTTGAAGACAGTGGTTGATTCTGATTTTCCTGGAA 286
|| | ||||| |||| ||||||||||||||||||||| |||||| ||||| | |||||||
Sbjct 397 TTCTGAATTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGGAA 456
Query 287 CTGAGAAAAACAATCTACAACAGCACTTTCCTTCTGTAATATCAATGGGTTTCGATTCCA 346
| ||||||||||||| |||||||| ||| |||||||| | || | ||| || ||
Sbjct 457 CGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACGGG-TT---TT--- 509
Query 347 AAGATTCAAAGTACACAAAGGATTCGAGACCAGAAATTGGAGATCAAAGTCTAAAATACA 406
| |||| | ||||| | ||||||||| ||||| |||||||| |||||||
Sbjct 510 --G---CAAA-T--------GATTCAACACCAGAAATCGGAGAGCAAAGTCTGAAATACA 555
Query 407 TTGGAAGAATATTTTTTGCATTTGTTTTGATGTTTATTCTTGGTGGCCTCTTCACAGTGG 466
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTGGGAGGATATTTTTTGCATTTGTTTTGATGTTTATTCTTGGTGGCCTCTTCACAGTGG 615
Query 467 CTCTTGAGAACCTTCCCAGACTTA-TATTGCTCTTTAAAAACTCGTCCATGTAA 519
|||||||||||||||| ||| ||| ||||||||||||| ||||| | | |||||
Sbjct 616 CTCTTGAGAACCTTCCTAGA-TTAATATTGCTCTTTAACAACTCTTTCGTGTAA 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5