BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891364

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4...   276    1e-73


> AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12566935-12568754 
REVERSE LENGTH=1288
Length=1288

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 184/200 (92%), Gaps = 5/200 (3%)
 Strand=Plus/Plus

Query  140  AAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTGAAGAGAGT  198
            ||||| ||||| |||||||| |||||||||||||||||||| ||| || ||||| |||||
Sbjct  530  AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTGAAAAGAGT  588

Query  199  AGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACT  258
            ||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  589  AGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACT  648

Query  259  ATTGAAGAAGACGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTT  318
            ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  649  ATTGAAG-A-A-GATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTT  705

Query  319  GCAGCTGCTGGAAAACTTTT  338
            || ||||||| ||| |||||
Sbjct  706  GCGGCTGCTGTAAATCTTTT  725


 Score =  100 bits (54),  Expect = 1e-20
 Identities = 62/66 (94%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  342  GCCACTGAAGGGTCATGTAGAGAGGCACAGCCCATGGCCGTCATGGTCACTGCTCGTGCC  401
            ||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||
Sbjct  796  GCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCC  855

Query  402  AAATGG  407
            ||||||
Sbjct  856  AAATGG  861



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5