BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891370
Length=513
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 569 7e-162
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 396 1e-109
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 569 bits (308), Expect = 7e-162
Identities = 408/454 (90%), Gaps = 15/454 (3%)
Strand=Plus/Plus
Query 63 GGACTGCTCTCACTTCTACTGCAACGATTGTGTCTCTAAATATATAGCTGCAAAATTACA 122
||| ||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||
Sbjct 415 GGA-TGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACA 473
Query 123 AGACAACATCCTCTCAATC-AAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCG 181
||||||||| ||||||||| || |||| ||||||||||| | |||||||||||||
Sbjct 474 AGACAACATTCTCTCAATCGAA-TGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCG 526
Query 182 AGCTAGATAAGTGTCGTCAGATCTTGGCC-AGAGAGGTTTTTGATCAGTGGGGTGATGCT 240
||| |||| ||||||||||||| || ||| | |||||||||||||| |||||||||||||
Sbjct 527 AGCCAGATCAGTGTCGTCAGAT-TTTGCCTAAAGAGGTTTTTGATCGGTGGGGTGATGCT 585
Query 241 CTT-TCTGAAGAAGTATTGATGCGTTCAAAGAAATTCTACTGTCCTTATAAGGATTGCTC 299
|| | ||||| |||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 586 -TTGTGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTC 644
Query 300 TGCTTTGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCAGAGTGTCCTCATT 358
||||||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||
Sbjct 645 TGCTTTGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATT 703
Query 359 GCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCAGAGATAACTTGCGAGG 418
| ||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||
Sbjct 704 GTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGG 763
Query 419 AGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTCGCGACGATGG 478
|||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 764 AGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGG 823
Query 479 CAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 512
||||| ||||||||||||||||||||||||||||
Sbjct 824 CAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTG 857
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 396 bits (214), Expect = 1e-109
Identities = 381/458 (83%), Gaps = 25/458 (5%)
Strand=Plus/Plus
Query 66 CTGCTCTCACTTC-TACTGCAACGATTGTGTCTCTAAATATATAGCTGCAAAATTACAAG 124
||| |||||| | || ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 516 CTGTTCTCAC-ACTTATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAG 574
Query 125 ACAACATCCTCTCAATCAAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGC 184
||||||| ||||||||||| || | ||| ||||||| |||| || | ||||||||
Sbjct 575 ACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGC 628
Query 185 TAGATAAGTGTC-GTCAGATCTTGGCC-AGAGAGGTTTTTGATCAGTGGGGTGATGCTCT 242
||||| || | |||| ||| | ||| ||||| || ||||||| |||||| || |||||
Sbjct 629 CCGATAAATG-CGGTCAAATCCT-GCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCT 686
Query 243 TT-CTGAAGAAGT-ATTGATGCGTTCAAAGAAATTCTACTGTCCTTATAAGGATTGCTCT 300
|| | || | || ||| ||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 687 TTGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCT 744
Query 301 GCTTTGCTTTTCATTG-ACGAGAGTGAAGT-GA-A-GATGAAAG-ATTCAGAGTGTCCTC 355
|||||||| ||| ||| |||||||||||| || | |||||| | || | ||||||||||
Sbjct 745 GCTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATGTAT-CGGAGTGTCCTC 802
Query 356 ATTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCAGAGATAACTTGCG 415
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 803 ATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCG 862
Query 416 AGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTCGC-GACG 474
|||||||||| |||||||| ||||||||||||| ||||| ||||| ||| | | ||
Sbjct 863 AGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAAT 921
Query 475 ATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 512
|||||| ||| ||||| |||| |||||||||||||||
Sbjct 922 ATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24514263736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5