BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891375

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03580.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...  93.5    1e-18


> AT4G03580.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1); 
Has 155 Blast hits to 136 proteins in 31 species: 
Archae - 0; Bacteria - 11; Metazoa - 28; Fungi - 14; Plants 
- 17; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). 
| chr4:1596985-1599091 FORWARD LENGTH=687
Length=687

 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 64/70 (91%), Gaps = 4/70 (6%)
 Strand=Plus/Plus

Query  212  AAAGGCTCCGAATGGAGAAAGCGGATCG-AGCGGAG-AGGATCAAGCGGATCATGCAGAT  269
            |||||||||||||||||||||||||||| | ||||| || ||||||||||||| ||||||
Sbjct  603  AAAGGCTCCGAATGGAGAAAGCGGATCGGA-CGGAGCAG-ATCAAGCGGATCAAGCAGAT  660

Query  270  CAAGCAGAAC  279
            ||||| ||||
Sbjct  661  CAAGCTGAAC  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5