BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891384
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37730.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 466 6e-131
AT5G37732.1 | Symbols: | unknown pseudogene | chr5:14987706-14... 355 1e-97
> AT5G37730.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23150.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:14986033-14986917 REVERSE LENGTH=690
Length=690
Score = 466 bits (252), Expect = 6e-131
Identities = 331/369 (90%), Gaps = 5/369 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGGGAAGAATAAAAAGTTGTTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT 60
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGAAAAGGAAGAATAAAAAGTTATTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT 123
Query 61 ATAAGATTTCTGGCAAACGAGGACGATGAAGTTTCAAATGTTATTAACACAACTTTGAAA 120
||||| ||| |||| ||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 124 ATAAGGTTTTTGGCCAACGAAGACGATGAAGTTTCAAGTGCTATTAACACAACTTTGAAA 183
Query 121 GCCTATGCTCGTCAAGGAAGGATCCCGGTTCTAGGATTCGATGTCGATAACTTCATTTTC 180
||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||
Sbjct 184 GCCTATGCTCGTCAAGGCAGGATCCCGGTTCTAGGGTTTGATGTCGACAACTTCATTTTC 243
Query 181 TACTCCATTAATGCCGGATTCAACACTTTAAATCCACAAGAGAAGATAGGTTCAATGGAT 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 244 TACTCCATTAATGCCGGATTCAACACTTTGCATCCACAAGAGAAGATAGGTTCAATGGAT 303
Query 241 GAAACGAATTTCTTGCTGTGCAAAAAAGAGCCAAATCCACAAGAAAAAGTCGAAAGAAGA 300
| ||| ||||||||| ||||||| ||||||||| |||| || ||||||||| | | |
Sbjct 304 GTAACAAATTTCTTGATGTGCAAGAAAGAGCCACGGCCACTGGAGAAAGTCGAAGGTATA 363
Query 301 GGAGAGAGTAAAGCTTGGATAGGCCATGGATGGAAAACT-CGT--T-TTCTTCGGTCCTT 356
||||||||| |||| ||||||||||||||||||||||| | | | ||||||||| ||
Sbjct 364 AGAGAGAGTAGAGCTCGGATAGGCCATGGATGGAAAACTAC-TCATCTTCTTCGGTTTTT 422
Query 357 ATTACGATA 365
|||| ||||
Sbjct 423 ATTAGGATA 431
> AT5G37732.1 | Symbols: | unknown pseudogene | chr5:14987706-14988261
REVERSE LENGTH=380
Length=380
Score = 355 bits (192), Expect = 1e-97
Identities = 277/318 (87%), Gaps = 6/318 (2%)
Strand=Plus/Plus
Query 1 ATGAAAGGGAAGAATAAAAAGTTGTTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT 60
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAAAGGGGAGAATAAAAAATTGTTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGCCCT 60
Query 61 ATAAGATTTCTGGCAAACGAGGACGATGAAGTTTCAAATGTTATTAACACAACTTTGAAA 120
||||| ||| |||| || || |||||||||||||||| ||||||||||||||| ||||||
Sbjct 61 ATAAGGTTTTTGGCCAATGAAGACGATGAAGTTTCAAGTGTTATTAACACAACCTTGAAA 120
Query 121 GCCTATGCTCGTCAAGGAAGGATCCCGGTTCTAGGATTCGATGTCGATAACTTCATTTTC 180
||||||||||||||||| ||||||||||||||||| ||||| || |||||| ||| ||||
Sbjct 121 GCCTATGCTCGTCAAGGGAGGATCCCGGTTCTAGGGTTCGAAGTGGATAACCTCAATTTC 180
Query 181 TACTCCATTAATGCCGGATTCA--AC-ACTTTAAATCCACAAGAGAAGATAGGTTCAATG 237
|| |||||||| |||||||||| | | ||| ||| ||||||||||||||| ||||||
Sbjct 181 TATTCCATTAACGCCGGATTCAGTAGTATTTTCCATC-ACAAGAGAAGATAGGATCAATG 239
Query 238 GATGAAACGAATTTCTTGCTGTGCAAAAAAGAGCCAA-ATCCACAAGAAAAAGTCGAAAG 296
|||| |||||||| |||| |||||| |||||||||| | ||| ||||||||| ||||
Sbjct 240 GATGTAACGAATTCCTTGTTGTGCATGAAAGAGCCAAGA-CCATTGGAAAAAGTCCAAAG 298
Query 297 AAGAGGAGAGAGTAAAGC 314
|| | ||||||||||||
Sbjct 299 AAAAATAGAGAGTAAAGC 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5