BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891390
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits t... 1393 0.0
> AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits
to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa
- 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes
- 14 (source: NCBI BLink). | chr2:13997382-13999828 REVERSE
LENGTH=1191
Length=1191
Score = 1393 bits (754), Expect = 0.0
Identities = 849/893 (95%), Gaps = 13/893 (1%)
Strand=Plus/Plus
Query 1 ATGTCGATGGGAAGCGACACGACGTGGGTTGGGAAGAAACCGATCAGGCGCATCGGCGGA 60
|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 114 ATGTCGATGGGAGGCGACACGACGTGGGTTGGGAAGAAGCCGATCAGACGCATCGGTGGA 173
Query 61 TTGTCTGATGCTCTCTCTATCGCCTCCGATCTTGGTTTCGCCGTCGCTCCTCCTCCGTCG 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 TTATCTGATGCTCTCTCTATCGCCTCCGATCTCGGTTTCGCCGTCGCTCCTCCTCCGTCG 233
Query 121 CAGGAAGAATTACAAAGCTTGGCGTCTTCAAATGGGGAAAGAGGTGACGATTTGATAAGG 180
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 234 CAGGAAGAATTACAAAGCTTTGCGTCTTCGAATGGGGAAAGAGGTGATGATTTGATAAGG 293
Query 181 GTATTGAGAGAGTTATCTGCTGTTCAAAGGAAAATTGCAGACTTGCAGGTCGAGCTTCAA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GTATTGAGAGAGTTATCTGTTGTTCAAAGGAAAATTGCAGACTTGCAGGTCGAGCTTCAA 353
Query 241 GGGAGGAAGGATGATAAAAATGTGGCGCATTTGACTCATG-TGAGTGAAATGCAAAAGAA 299
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 354 GGGAGGAAGGATGATAAAAATGTGGCGCATTTGACTCATGTTG-GTGAAATGCAAAAGAA 412
Query 300 AATCGAGACTTTGTCAAGGATTACT-AAGATATTGAAAGATGTTATACAAAACAAGGATC 358
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 413 AATCGAGACTTTGTCAAGGATTACTCAA-ATATTGAAAGATGTTATACAAAACAAGGATC 471
Query 359 GCATCATTGCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GCATCATTGCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAAT 531
Query 419 ATCAGAAACAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATCAGAAACAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAG 591
Query 479 CATCAGTGTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGG 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CATCCGTGTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGG 651
Query 539 AAATGCTGCGCCCAATACCGGTGGCGCTAGCTTCATGTACGAGATTCTTTGAGGCCATGT 598
|||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 652 AAATGCTGCGTCCAATACCTGTGGCACTAGCGTCATGCACGAGATTCTTTGAGGCCATGT 711
Query 599 CTGCGATGAGAGAATCGTTCGCGACTCTTCAAAAACTTCGAGTTGGTAACTCTGTGGTTT 658
|||||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 712 CTGCGATGAGAGAATCATTCGCGACTCTTCAAGAGCTTCGAGTTGGTAACTCTGCAGTTT 771
Query 659 CTGTACCAACAACACCAGGAGGTAACGAAATGACACATAGAGACTTAGATTGTATGACTC 718
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 772 CTTTACCAACAACACCAGGAGGTAACGAAATGACACATAGAGACTCAGATTGTGTGACTC 831
Query 719 CACCTCAAGGGAGAACAGAGTCAAGCTTCGACGACTTAGCTGTTCATAACACAAGGAGAC 778
||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 832 CACCTCAAGGGAGGATAGAGTCAAGCTTCGACGATTTAGCTGTTCATAAAACAAGGAGAC 891
Query 779 AAAACAATGATCAAAATgaagaagaagaagaagaagaaga---------TGGTAATAACA 829
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 892 AAAACAATGATCAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAATAACA 951
Query 830 ATTCGAACCGGAGACTATCTTGGCCTCCTCCTGTAAAAAAGAGTAGCGTTTAA 882
|| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 952 ATGGGAACCGGAGACTATCTTGGCCTCCTTCTGTAAAAAAGAGTAGCGTTTAA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5