BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891407
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37820.1 | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic prot... 1352 0.0
AT5G37810.1 | Symbols: NIP4;1, NLM4 | NOD26-like intrinsic prot... 1037 0.0
> AT5G37820.1 | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein
4;2 | chr5:15050261-15051542 FORWARD LENGTH=852
Length=852
Score = 1352 bits (732), Expect = 0.0
Identities = 812/852 (95%), Gaps = 0/852 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCGCATTGTGAAGAGATCGAAGCCGAACAAATATCAAGAATTGAGAAAGGTAAT 60
|||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1 ATGACTTCTCATGGTGAAGAGATCGAAGACGAACAAATATCAAGAATTGAGAAAGGCAAT 60
Query 61 GGCAAAGATAGCCAAGGAGGAATCGAGACGGCCATATGTACTTCTCCCAGCATTGTTTGC 120
|||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 61 TGCAAAGATAGCCAAGGAGGAATGGAGACGGCCATATGTAGTTCTCCTAGCATTGTTTGC 120
Query 121 CTTACACAAAAGTTGATAGCAGAGATGATTGGGACGTATTTCATAATATTCTCTGGATGT 180
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 CTTACACAAAAGTTGATAGCAGAGATGATTGGAACCTATTTCATAATATTCTCTGGATGT 180
Query 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTAGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTG 240
Query 241 ACTTGGGGTCTCATAGTTATGGTCATGATTTACTCTACCGGTCACATTTCCGGTGCACAT 300
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACAT 300
Query 301 TTTAACCCGGCCGTCACTGTCACTTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTA 360
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTAACCCTGCCGTCACTGTCACGTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTA 360
Query 361 CCATTGTATATAGGTGCACAACTTACGGGATCGTTACTAGCGAGTTTGACATTGAGACTA 420
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 CCATTGTATATAGGTGCACAACTTACGGGATCATTACTAGCGAGTTTAACATTGAGACTA 420
Query 421 ATGTTCAATGTGACACCAAAAGCTTTCTTTGGAACAAGTCCGACTGATTCATCGGGACAA 480
||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 421 ATGTTCAATGTGACACCCAAAGCTTTCTTTGGAACAACTCCAACTGATTCATCAGGACAA 480
Query 481 GCACTCGTTGCAGAGATCATTATCTCATTCCTCCTCATGTTTGTAATCTCTGGTGTTGCC 540
||||| || |||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 481 GCACTAGTAGCAGAGATCATTATCTCATTCCTCCTCATGTTCGTTATCTCCGGCGTTGCC 540
Query 541 ACTGATAGTCGTGCGACCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTTG 600
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 ACTGATAGTCGTGCGACTGGAGAATTAGCTGGAATCGCGGTGGGGATGACTATAATATTG 600
Query 601 AACGTCTTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACGTCTTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGGA 660
Query 661 CCGGCAATAGTGATGGGAAGATATAAAGGAATTTGGGTTTACATTGTTGGTCCCTTCGTC 720
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 CCAGCAATAGTGATGGGAAGATATAAAGGAATTTGGGTTTACATTGTTGGTCCCTTTGTC 720
Query 721 GGAATTTTTGCCGGAGGTTTTGTTTACAACTTCATGAGATTTACGGATAAGCCACTCCGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 GGAATTTTTGCCGGAGGTTTTGTTTACAACTTCATGAGATTTACGGATAAGCCACTACGA 780
Query 781 GAACTCACAAAAAGTGCTTCTTTTCTTCGTAGCGTTGCCCaaaaaaaCAATGCTTCTAAA 840
||||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||
Sbjct 781 GAACTCACAAAAAGTGCTTCTTTCCTCCGTAGTGTTGCCCAAAAAGACAATGCTTCTAAA 840
Query 841 TCTGAGGGCTAA 852
|| || ||||||
Sbjct 841 TCAGATGGCTAA 852
> AT5G37810.1 | Symbols: NIP4;1, NLM4 | NOD26-like intrinsic protein
4;1 | chr5:15045232-15047807 FORWARD LENGTH=852
Length=852
Score = 1037 bits (561), Expect = 0.0
Identities = 742/829 (90%), Gaps = 13/829 (2%)
Strand=Plus/Plus
Query 1 ATGACTTCGCATTGTGAAGAGATCGAAGCCGAACAAATATCAAGAATTGAGAAAGGTAAT 60
||| |||||||| |||| || ||||||| |||||||||||||||||||||||||| ||
Sbjct 1 ATGTCTTCGCATAGTGATGAAATCGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAA 60
Query 61 GGCAAAGATAGCCAAGGAGGAATCGAGACGGCCATATGTACTTCTCCCAGCATTGTTTGC 120
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 GGCAAAGATTGCCAAGGAGGAATCGAGACGGTTATATGTACTTCTCCCAGCATTGTCTGC 120
Query 121 CTTACACAAAAGTTGATAGCAGAGATGATTGGGACGTATTTCATAATATTCTCTGGATGT 180
||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 121 CTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTTATAGTATTCTCTGGATGT 180
Query 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTT 240
Query 241 ACTTGGGGTCTCATAGTTATGGTCATGATTTACTCTACCGGTCACATTTCCGGTGCACAT 300
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACAT 300
Query 301 TTTAACCCGGCCGTCACTGTCACTTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTA 360
|||||||| ||||| || || |||||||| ||||||| |||||||||||| ||||||||
Sbjct 301 TTTAACCCTGCCGTTACCGTTACTTTCGCCATTTTCCGACGGTTTCCTTGGCATCAGGTA 360
Query 361 CCATTGTATATAGGTGCACAACTTACGGGATCGTTACTAGCGAGTTTGACATTGAGACTA 420
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 361 CCATTGTATATAGGTGCACAATTTGCGGGATCGTTACTAGCGAGTTTGACATTGAGACTA 420
Query 421 ATGTTCAATGTGACACCAAAAGCTTTCTTTGGAACAAGTCC-GACTGATTCATCGGGACA 479
||||| || |||||||| |||||||||||||||| | ||| | ||||||| | | ||
Sbjct 421 ATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACGACTCCAG-CTGATTCGCCAGCACG 479
Query 480 AGCACTCGTTGCAGAGATCATTATCTCATTCCTCCTCATGTTTGTAATCTCTGGTGTTGC 539
||| ||||| ||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 480 AGCGCTCGTCGCAGAAATCATTATCTCATTCCTCCTCATGTTCGTTATCTCTGGAGTTGC 539
Query 540 CACTGATAGTCGTGCGACCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTT 599
||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CACCGATAATCGTGCGGTTGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATGGT 599
Query 600 GAACGTCTTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGG 659
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 600 AAACGTCTTTGTGGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCAAGAAGTCTAGG 659
Query 660 ACCGGCAATAGTGATGGGAAG-ATATAAAGGA-ATTTGGGTTTACATTGTTGGTCCCTTC 717
||| ||| ||||||||||| | ||||||| | || ||||||||||||||||||||| ||
Sbjct 660 ACCAGCATTAGTGATGGGA-GTATATAAAC-ACATATGGGTTTACATTGTTGGTCCCGTC 717
Query 718 GTCGGAATTTT-TGCCGGAGGTTTTGTTTACAAC-TTCATGAGATTTACGGATAAGCCAC 775
| ||| || | | |||||||||||||||||||| || || |||||||||||||||||||
Sbjct 718 CTAGGAGTTATAT-CCGGAGGTTTTGTTTACAACCTT-ATCAGATTTACGGATAAGCCAC 775
Query 776 TCCGGGAACTCACAAAAAGTGCTTCTTTTCTTCGTAGC-GTTGC-CCaa 822
|||| |||||||| || || ||||||||||| ||| || ||| | ||||
Sbjct 776 TCCGAGAACTCACTAAGAGCGCTTCTTTTCTCCGT-GCCGTTTCTCCAA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5