BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891414
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59780.1 | Symbols: | NB-ARC domain-containing disease resi... 1441 0.0
AT5G05560.1 | Symbols: EMB2771 | E3 ubiquitin ligase, putative ... 254 3e-66
> AT1G59780.1 | Symbols: | NB-ARC domain-containing disease resistance
protein | chr1:21993581-21997691 REVERSE LENGTH=2721
Length=2721
Score = 1441 bits (780), Expect = 0.0
Identities = 1262/1482 (85%), Gaps = 83/1482 (6%)
Strand=Plus/Plus
Query 199 AAGGAGATGATTAAACATTGTGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTG 258
|||||||||| ||||||||| | |||||||||||||||||||| ||||||| |||||
Sbjct 1036 AAGGAGATGACAAAACATTGTAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTA 1095
Query 259 TTAGCTGCAAAACACACATCGCGTCAGTGGAAAATGATATCTGAGAATATTAAAGCTCAC 318
|||| ||| |||||||||| ||||||||||||| |||||||||||||||||| | |||||
Sbjct 1096 TTAGATGCCAAACACACATTGCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCAC 1155
Query 319 ATAGTTGAAGG-GCGGATTAGTTCCAATGATGACGATAGCAGTACGGTTAATCATGTTTT 377
||||||| || | ||| |||||||||||| ||||||||||| ||||||| |||||| |
Sbjct 1156 ATAGTTGTTGGAG-GGACTAGTTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCT 1214
Query 378 GTCTTTGAGCTATGAAGGATTGCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 437
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1215 GTCTTTGAGCTTTGAAGGATTGCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 1274
Query 438 TTATCCAGAAGATCATAAAATAAAAATAGACAGATTGTCTTATGTCTGGGCTGCAGAAGG 497
|||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1275 TTATCCCGAAGATCATGAAATCGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGG 1334
Query 498 AATAACAAATCCTAGGCATTACGATGGAGCTTCCATTCGACATAATGCGGATCTCAACAT 557
||||||| ||||| || ||||||| |||||| |||||||| || |||||||||| ||||
Sbjct 1335 AATAACATATCCTGGGAATTACGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACAT 1394
Query 558 AAAAGAGTTAGTGAAGAGAAATATGGTTATTTCTGAAAGAGACGTGTTTATTTCGAGATT 617
| ||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct 1395 AGAAGAGTTAGTGAAGAGAAATATGGTTATTTCCGAAAGAGACGCGTTGACTTCGAGATT 1454
Query 618 TGAATATTGTCAGTTGCATGACTTGATGAGAGAGATTTGTTTGTTAAAAGGCAAGGAAGA 677
|||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1455 TGAAAAATGTCAGTTGCATGACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGA 1514
Query 678 GAGCTTTATAAAGATTGTTAGTGATCCAGCCAGCAGATCA--CGTAGACTC----G-TT- 729
|| |||| || ||||||||| ||||||| ||||||| ||| |||| |||| | ||
Sbjct 1515 GAACTTTTTACAGATTGTTACTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTC 1574
Query 730 --G----T---GT----TC-T-GT--ACAGACAC---T-TTTA-A-TGGAGAGAGGGACA 766
| | || || | || ||| |||| | ||| | |||||||| || |
Sbjct 1575 TAGCAGATCACGTAGACTCGTAGTGTACA-ACACCAGTATTTTTAGTGGAGAGAACGATA 1633
Query 767 TTGA-GAATTCCAAACTTAGATCTCTCTTGTTTATTCTAGTTTCGTATCG--G-TTTGCG 822
| || |||||||||||||||||||||||||||||||| |||| |||| | | ||| ||
Sbjct 1634 T-GAAGAATTCCAAACTTAGATCTCTCTTGTTTATTCCAGTTGGGTATAGTAGGTTTTCG 1692
Query 823 ATGAGATCAGACTTCAT-GATGTTACCATTGTTGAGGGTTTTAGATCTC-AGTAGAGCTG 880
||| ||||| ||||||| || |||||||||||||||||||||||||||| | | |||||
Sbjct 1693 ATGGGATCAAACTTCATAGA-GTTACCATTGTTGAGGGTTTTAGATCTCGA-TGGAGCTA 1750
Query 881 AATTTGAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 940
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 AATTTAAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 1810
Query 941 GTTTATAT-ATGGCATATGTAACTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 999
|||||||| | ||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1811 GTTTATATCA-GGCATCTGTAACTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 1869
Query 1000 CTCTA-CTTCAATCTA-GAAATTTATAATCCTCGAGGTGACGC-GCATTA-CGTGCCCAA 1055
||||| || ||||||| | | | | ||| || | | | | || | |||| |||||||||
Sbjct 1870 CTCTATCT-CAATCTACGTA-T--A-AATTCT-G-G-TCA-GCTG-ATTAACGTGCCCAA 1919
Query 1056 TGTCTTCAAAGAGATGCTAGAACTGAGATACTTCT-CGTTACCAAGGAGAAC-AACTAGT 1113
|||||| |||||||||||||||||||||||| || | |||||| || ||| || ||||
Sbjct 1920 TGTCTTTAAAGAGATGCTAGAACTGAGATACCTCAGC-TTACCATGG-GAAAGAAGTAGT 1977
Query 1114 AGGACAAAGTTGGAATTGGGTAATCTACTCAAATTGGAGACGTTGA-AGAATTTCTCAAC 1172
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1978 TTGACAAAGTTGGAACTGGGTAATCTACTCAAATTGGAGACGTTGATA-AATTTCTCAAC 2036
Query 1173 AGAGAATAGCAATGTGACGGATCTTCACTGTATGAGAAGGCTAAGGAGTCTCCAGATCTT 1232
| || |||||| |||||| ||||||||| |||||| || |||||||| ||||| |||||
Sbjct 2037 AAAGGATAGCAGTGTGACAGATCTTCACCGTATGACAAAGCTAAGGACCCTCCAAATCTT 2096
Query 1233 AATCAGTGGCGAGGGGTGGCGTATGGAAACTCTATCATCAACTCTCGGTGAA-TTGAAAC 1291
||||||||||||||||| || |||||||||||| || ||| |||| || | ||| ||
Sbjct 2097 AATCAGTGGCGAGGGGTTGCATATGGAAACTCTGTCTTCAGCTCTAAGT-ATGTTGGGAC 2155
Query 1292 ACTTGGAACG-TCT-ACTTATAAAATCTCCCAAGAATTCTGTTCA-TCTCAAGCACCCAA 1348
|||||||| | ||| || ||| | || || ||||||| ||||| | |||||||||| |
Sbjct 2156 ACTTGGAA-GATCTTACAG-TAACACCTTCCGAGAATTCCGTTCAGT-TCAAGCACCCGA 2212
Query 1349 AGTTGATATATAGGCCAATGTTACCTGACGTGCAACATTTTCCTTCTCATCTTACAACCA 1408
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2213 AGTTGATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACAACCA 2272
Query 1409 TATCTCTA--A-ATGGTTCTCGTTTGGAGGAGGATCCGATGCCAATTCTAGAGAAACTGC 1465
|||||||| | || ||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 2273 TATCTCTAGTATATTGTT-T--TTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGC 2329
Query 1466 TACAATTGAAA-TGGGTTTCTTTATGGGAGAACGCTTATGTTGGGAGGAGAATGGTTTGC 1524
||||| ||||| ||| ||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 2330 TACAACTGAAAGTGG-TTTCTTTATGGTACAACGCCTATGTTGGGAGGAGAATGGTTTGC 2388
Query 1525 TCCAGCGGTGGGTTTCCTCAATTGCATGGGCTCTCAA-TAAGCATACTAGAGGAATGGGA 1583
|| ||||||||||||||| |||||| |||| | || || | |||||| | | |||
Sbjct 2389 ACCGGCGGTGGGTTTCCTCCATTGCACAGGCT-TGAAATATGGGGACTAGATGCCTTGGA 2447
Query 1584 AGAGTGGATTGTAGAAGAAGGCTCCATGCCACAACTTCATAC 1625
||||||||| |||||||||||||||||||| | ||||||||
Sbjct 2448 AGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAC 2489
> AT5G05560.1 | Symbols: EMB2771 | E3 ubiquitin ligase, putative
| chr5:1641452-1654756 FORWARD LENGTH=5108
Length=5108
Score = 254 bits (137), Expect = 3e-66
Identities = 165/179 (92%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGACTACGATGAGAGAACAATTTGGACATGTGACCATCTACCTCTTATGACGTCA 60
|||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 676 ATGAAGGACTACGATGAGAGGACAATTTGGACAAGTGACCGTCTACCTCTTATGACGTCG 735
Query 61 TATAACAAAGGCAAGATGCAACATTCTGTGTGGAAAGCCGAATTTATAGATTCAAACCTT 120
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 736 TATAACAAAGGCAAGATGCAACATTCTGTGTGGGCGGCCGAATTTATAGAGTCAAACCTT 795
Query 121 GAAGCTTCTGCTTCATGTTCAAGCGGTGTTGTTCCTGATGCTGTTTTCCCAAAGCGGGT 179
||||||||||| |||||||||||||| ||||||||||||||||| || | ||||||||
Sbjct 796 GAAGCTTCTGCGTCATGTTCAAGCGGCATTGTTCCTGATGCTGTTCTCTCGAAGCGGGT 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5