BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891424

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02930.1 | Symbols:  | GTP binding Elongation factor Tu fami...   248    3e-65


> AT4G02930.1 | Symbols:  | GTP binding Elongation factor Tu family 
protein | chr4:1295409-1298404 REVERSE LENGTH=1757
Length=1757

 Score =  248 bits (134),  Expect = 3e-65
 Identities = 158/170 (93%), Gaps = 0/170 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGGTGGAATTCTTGTGGTTTTAGGTCCAGATGGACCCATGCCACAGACAAAAGAA  60
            |||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||| |||
Sbjct  510  ATGGATGGCGGAATTCTTGTGGTTTCAGGACCAGATGGACCCATGCCGCAGACAAAGGAA  569

Query  61   CATATCCTACTTACACGCCAGGTTGGTATTTCCTCACTTGTGTGCTTCTTGAACAAAGTT  120
            ||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct  570  CATATTCTACTTGCACGCCAGGTTGGTGTTCCCTCACTTGTGTGCTTCTTGAACAAAGTT  629

Query  121  GATGTGGTGGATGATCCTAAGCTGTTGGAGCTTGTCGAGATGGAACTACG  170
            |||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct  630  GATGTGGTGGATGACCCTGAGCTCTTGGAGCTTGTCGAGATGGAACTACG  679


 Score =  228 bits (123),  Expect = 4e-59
 Identities = 131/135 (97%), Gaps = 0/135 (0%)
 Strand=Plus/Plus

Query  172  GGCACCAATGATGAAATTGGAAGGCAAGCTATATTAAAGCTAATGGATGCTGTTGATGAA  231
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  756  GGCACCAATGATGAAATTGGAAGGCAAGCTATATTAAAGCTGATGGATGCTGTTGATGAA  815

Query  232  TACATACCTGACCCTGTTCGCGTGCTTGACAAGGCTTTCTTGATGCCAATTGAAGATGTT  291
            || |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct  816  TATATACCTGACCCTGTTCGCGTCCTTGACAAGCCTTTCTTGATGCCAATTGAAGATGTT  875

Query  292  TTCTCAATTCAAGGA  306
            |||||||||||||||
Sbjct  876  TTCTCAATTCAAGGA  890


 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 44/44 (100%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  309  CATTAAAGTGGGTGAAGAAGTTGAGATATTGGGTTTACGTGAGG  352
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  929  CATTAAAGTGGGTGAAGAAGTTGAGATATTGGGTTTACGTGAGG  972



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5