BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891428

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07770.1 | Symbols: RPS15A | ribosomal protein S15A | chr1:2...   472    1e-132


> AT1G07770.1 | Symbols: RPS15A | ribosomal protein S15A | chr1:2408203-2409577 
REVERSE LENGTH=725
Length=725

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 279/291 (96%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGA  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  ATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGA  182

Query  61   GGCAAGAGGCAGGTCATGATCAGGCCTTCCTCAAAAGTGATTATCAAGTTTCTGATTGTC  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  183  GGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATTGTC  242

Query  121  ATGCAGAAGCACGGTTACATCGGCGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAG  180
            |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  243  ATGCAGAAGCACGGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAG  302

Query  181  ATCGTTGTTGAGTTAAATGGAAGGTTGAACAAGTGTGGTGTCATCAGCCCACGTTTTGAT  240
            ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  303  ATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTTGAT  362

Query  241  GTTGGTGTCAAGGAGATTGAAGGTTGGACTGCCCGTTTACTGCCTTCTAGA  291
            |||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct  363  GTTGGTGTCAAGGAAATTGAAGGTTGGACTGCCCGTTTGCTCCCTTCTAGA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5