BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891461
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 865 0.0
> AT5G41960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:16789714-16791042
FORWARD LENGTH=874
Length=874
Score = 865 bits (468), Expect = 0.0
Identities = 604/666 (91%), Gaps = 24/666 (4%)
Strand=Plus/Plus
Query 1 ATGGCGTCTCTGTCGTGTCTCTCGATTTGCGGACTTTCATCTTCCGCCTCTTTCTCCCCC 60
||||||||||||||||||||| ||||||||||||||||||||||||| || ||| | ||
Sbjct 47 ATGGCGTCTCTGTCGTGTCTCCCGATTTGCGGACTTTCATCTTCCGCTTCACTCTACACC 106
Query 61 AAGCCCCGACTA--GTC-TCTTC-TC--C-T--CCGTCACCGCTTCCTCTAACCTATCCC 111
||| |||||||| || ||||| || | | ||||| |||||||||||| ||||| ||
Sbjct 107 AAGGCCCGACTACTTTCTTCTTCTTCTTCTTCCCCGTCGCCGCTTCCTCTAGCCTAT-CC 165
Query 112 T-TACGAAACCCTAAGAAGCTATGTAGGAAGAAGATTGAGAGAGTAATTTGCAGAGCTGA 170
| ||| |||||||||||||||||||| | | |||||||||||||||||||||||||| ||
Sbjct 166 TCTACAAAACCCTAAGAAGCTATGTA-G-A-AAGATTGAGAGAGTAATTTGCAGAGCGGA 222
Query 171 GTTTTCACAAGACGCGCCACTCGTAACCGCCATTGGTGCGTGTATCCTCAGTTCATTTGT 230
||||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 223 GTTTTCACAGGACGCACCACTCGTAACAGCAATTGGTGCGTGTATCCTAAGTTCATTTGT 282
Query 231 TTTTCCGGCAGCGAAACGAGTCAACGATGAGgaagaagaagaagaagaagagaaCTCAGC 290
|||||||| |||||||||||||||||||| | ||||||||||||| | | ||||||||
Sbjct 283 TTTTCCGGTGGCGAAACGAGTCAACGATGA-G--GAAGAAGAAGAAG-A-A-AACTCAGC 336
Query 291 AATTGTGTCAACAGATATGAGATTAGCCGCCATGGGAATCATTAGCTTCATACCTTACTT 350
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 337 GATTGTGTCAACAGATATGAGATTAGCCGCCATGGGAATCATCAGCTTCATACCTTACTT 396
Query 351 CAATTGGCTGAGTTGGGTCTTTGCTTGGCTTGACACTGGAAAATCTCGTTATGCTGTTTA 410
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CAATTGGCTGAGTTGGGTGTTTGCTTGGCTTGACACTGGAAAATCTCGTTATGCTGTTTA 456
Query 411 TGCTCTTGTTTATCTTCTTCCTTATTTGAGTTCGAATCTGTCTATTTCTCCAGAAGAGAG 470
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 457 TGCTCTTGTTTATCTTGTTCCTTATTTGAGTTCAAATCTGTCTATTTCTCCAGAAGAGAG 516
Query 471 CTGGTTACCAATTACAAGCATTGTCTTGGGCATTATTCATGTTCAGCTTGAAGCAAGCAT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTGGTTACCAATTACAAGCATTGTCTTGGGCATTATTCATGTTCAGCTTGAAGCAAGCAT 576
Query 531 TGCAAATGGTGATGTTGAGACACTTTCATTCTTCAGAAACACTTGTGATAAAGATTTTTC 590
|||||||| ||||||||||||||| |||||||||||||||| | |||| | ||||||||
Sbjct 577 CGCAAATGGGGATGTTGAGACACTTGCATTCTTCAGAAACACATCTGATGACGATTTTTC 636
Query 591 ATCTAAGAAACGAATCCACTTTGACAAACATTCCAAGGAGAAAGA-CAGTGAC-ACTGAA 648
|||||||||| ||||||| ||| | ||||||| ||||| |||| | ||||||| | ||||
Sbjct 637 ATCTAAGAAAAGAATCCATTTTAAGAAACATTTCAAGG-GAAAAAACAGTGACGA-TGAA 694
Query 649 AGTTAA 654
| ||||
Sbjct 695 AATTAA 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5