BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891467
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41900.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2366 0.0
> AT5G41900.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:16768953-16771696 FORWARD LENGTH=1624
Length=1624
Score = 2366 bits (1281), Expect = 0.0
Identities = 1371/1416 (97%), Gaps = 0/1416 (0%)
Strand=Plus/Plus
Query 1 ATGGGCATTGCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTCTCCTCGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 ATGGGCATTGCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTCTCCTCGAC 139
Query 61 ATTGCCGATTTCTTGCTATGTTATACTTACAAGACTTTGGATTACTTCTTGGAGTCCGAG 120
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 140 ATTGCTGATTTCTTGCTTTGTTACACTTACAAGACTTTGGATTACTTCTTGGAATCCGAG 199
Query 121 AGGAAACCTTGCTATTGCTCTTCTCCACCAGAGGCTCAAGCCAAGACCGCGAAGATCATA 180
|||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 200 AGGAAACCTTGCTACTGCTCTTCTCCACCAGAGGCTAAAGCCAAGACCGAGAAGATCATA 259
Query 181 GTGTCGGAAAGAGGCGGGTACTCAAAGGTTGTGTCTCTAACAAGAAGTAAGATCCATTTC 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTGTCGGAACGAGGCGGGTACTCAAAGGTTGTGTCTCTAACAAGAAGTAAGATCCATTTC 319
Query 241 GATGAGATCTCGGACACGCTTTACTCACGTGGTCCTTCACTTCTAACGAGGCTCTCTAAG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 320 GATGAGATCTCGGACACGCTTTACTCACGTGGCCCTTCACTTCTAACGAGGCTCTCTAAG 379
Query 301 CTCGTGAGGTCCGTGAAATGTTTTAATTATAAGGGTTTGATCATGAGAGGCAATGTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CTCGTGAGGTCCGTGAAATGTTTTAATTATAAGGGTTTGATCATGAGAGGCAATGTGGTG 439
Query 361 GAATCTTGTGATCATCATGAGTCTAAGAAGAAGATTAGAAAAGCTAAAAAGAGATTGATG 420
||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |||
Sbjct 440 GAATCTTGTGATCATCATGAGTCTAAGAAAAAGATTAGCAAAGGTAAAAAGAGATTAATG 499
Query 421 ACTTTGAATTCTACGGTGGTTGAGAAATCTTCGACAGCTCCAAGATGGTCGGATTGCCAT 480
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ACTTTGAATTCTACCGTGATTGAGAAATCTTCGACAGCTCCAAGATGGTCGGATTGCCAT 559
Query 481 TGCAGTTTCTGCACTTCTTGGCTTACTTCTTCCAACAGAGATTCTCTGTTTGTCAAAGTT 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 560 TGCAGTTTCTGCACTTCTTGGCTTACTTCTACCAACAGAGATTCTCTGTTTGTTAAAGTT 619
Query 541 CAACAACCCAAAGATAACAAGAAGGCCCGAGACAACGTTGTGTTTATACATGGTTTCGTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 620 CAACAACCCAAAGATAACAAGAAGGCCCGAGACAACGTTGTGTTTATACATGGTTTTGTA 679
Query 601 TCATCATCCGCGTTTTGGACGGAGACTCTCTTCCCAAATTTTTCTGATTCAGCCAAATCA 660
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 680 TCATCATCCGCGTTTTGGACGGAGACTCTCTTCCCAAACTTTTCTGATTCAGCCAAATCG 739
Query 661 AACTACAGGTTCATCGCAGTCGATCTTTTAGGCTATGGAAGAAGTCCTAAGCCAAATGAC 720
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 740 AACTATAGGTTCATCGCAGTCGATCTTTTGGGCTATGGAAGAAGTCCTAAGCCAAATGAC 799
Query 721 TCGTTATATACTTTAAGAGAACATTTGGAGATGATTGAGAAATCGGTGATCTCTCAGTTC 780
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 800 TCATTATATACTTTAAGAGAACATTTGGAGATGATTGAGAAATCGGTGATCTCTAAGTTC 859
Query 781 AAGCTCAAAACGTTCCACATAGTAGCTCACTCCTTAGGCTGCATTTTGGCTCTTGCACTC 840
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 860 AAGCTCAAAACGTTCCACATAGTAGCTCATTCCCTAGGCTGCATTTTGGCTCTTGCACTC 919
Query 841 GCAGTTAAACATCCAGGAGCTATCAAATCCCTTACTCTTTTGGCTCCTCCATATTACAAG 900
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 GCAGTAAAACATCCGGGAGCTATCAAATCCCTTACTCTTTTGGCTCCTCCATATTACAAG 979
Query 901 GTGCCAAAGGGAGTCCAACCAGCGCAATACGTGATGAGGGAAGTGGCTCGGAAGGAAGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 GTGCCAAAGGGAGTCCAACCAGCGCAATACGTGATGAGGGAAGTGGCTCGGAAGGAAGTT 1039
Query 961 TGGCCACCGATGCAGTTTGGTGCATCTGTACTTAGCTGGTATGAGCACCTAGGCCGGACC 1020
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1040 TGGCCACCGATGCAGTTTGGTGCATCGGTGCTTAGCTGGTATGAGCACCTAGGCCGCACC 1099
Query 1021 ATTGGCCTTGTCCTTATCAAAAACCATCACTTGATTGAATTTGTCACCCGCCTCCTCACC 1080
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1100 ATTGGCCTTGTCCTTATCAAGAACCATCAATTGATTGAATTTGTCACCCGCCTCCTTACC 1159
Query 1081 CTAAACAGGATGCGAACGTATTTGATAGAAGGATTCTTATGTCACACACATAATGGGTCA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1160 CTAAACAGGATGCGAACGTATTTGATAGAAGGATTCTTATGTCACACACATAATGGATCA 1219
Query 1141 TTTCACACATTACACAACATCATCTTCGGGTCAGGAGCCAAGCTCGACTCGTATCTCGAC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TTTCACACATTACACAACATCATCTTCGGGTCAGGAGCCAAGCTCGACTCGTATCTCGAC 1279
Query 1201 CATGTCCGTGACCACGTGGACTGCGACGTTGCCATCTTCCACGGTGGCAAGGACGAGCTC 1260
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1280 CATGTCCGTGACCATGTGGACTGCGACGTCGCCATTTTCCACGGTGGCAAGGACGAGCTC 1339
Query 1261 ATTCCTGTGGAGTGTAGCTACAGTGTCAAGAGCAAAGTACCACGTGCCACTGTCCACGTC 1320
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1340 ATTCCTGTGGAGTGTAGTTACAGTGTGAAGAGCAAAGTGCCACGTGCCACTGTCCACGTC 1399
Query 1321 ATCCCTGACAAAGACCACATCACCATTGTGGTTGGCCGACAAAAAGACTTTGCACGAGAG 1380
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1400 ATCCCTGACAAAGACCACATCACCATTGTCGTCGGCCGACAAAAAGACTTTGCACGAGAG 1459
Query 1381 CTTGAGCTCATTTGGCAAAGATCCCAATCAACTTAA 1416
||||||||||||||||||||| || |||||||||||
Sbjct 1460 CTTGAGCTCATTTGGCAAAGAACCAAATCAACTTAA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5