BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891469
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases... 1707 0.0
> AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases
| chr5:16760908-16764276 FORWARD LENGTH=1620
Length=1620
Score = 1707 bits (924), Expect = 0.0
Identities = 1020/1066 (96%), Gaps = 8/1066 (1%)
Strand=Plus/Plus
Query 104 ACGATGGGAAACATCCTGGTTGTGATGAATACTACTTTGGTAGAAGAGAATTCTCGTTTA 163
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 217 ACGATGGGAAACATCCTGGTTGTGATGAATATTACTTTGGTAGAAGAGAATTCTCGTTTA 276
Query 164 CGCTTGAAAATGATGTTTATTTGCGGTATAAGTCTTTTAAGAATGCTTCAGTTATGGAAG 223
|||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 277 CGCTTGAAAACGATGTTTATTTGCGGTATAAGTCTTTCAAGAATGCTTCACTTATGGAAG 336
Query 224 ATGCAATCAAATCGAATTTTCCATACAAGATTGATATTGGTGCTGTGTATAGCGTTGATC 283
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTGCTATCAAATCGAATTTTCCATACAAGATTGATATTGGTGCTGTGTATAGCGTTGATC 396
Query 284 CAGATAAGAGACATGCTTATGCACATAGTGGAACCAATTTGTTTACTCCAGTGGAGAGGG 343
| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 397 CGGATAAGAGACATGCATATGCTCAAAGTGGAACCAATTTGTTTACTCCAGTGGAGAGGG 456
Query 344 AGTTAGTCTTTGATATTGATATAACAGATTATGATGATGTTAGATACTGTTGCTCGGGAG 403
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 457 AGTTAGTCTTTGATATTGATATAACAGATTATGATGATGTTAGATACTGTTGTTCGGGAG 516
Query 404 CTGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATACTT 463
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CCGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATACTT 576
Query 464 CCTTAAGAGAGGATTTTGGTTTCAAACATATTCTCTGGGTCTTCAGTGGACGTCGTGGAG 523
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 577 CCTTAAGAGAGGATTTTGGTTTCAAACACATCCTCTGGGTCTTCAGTGGACGTCGTGGAG 636
Query 524 TTCACTGTTGGGTTTGTGATGCTAAAGCTCGAAGGTTGACTAATGAGCAAAGATCAGCAG 583
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 637 TTCACTGTTGGGTTTGTGATGCTAAAGCTCGAAGGTTGACTAATGAACAAAGATCAGCAG 696
Query 584 TTGCTGAATACTTCCGTGTTTATAAGGGAAATGAAAACAATGCaaaaaaaGTCGATCTTA 643
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 697 TTGCTGAATACTTTCGTGTTTATAAGGGAAATGAAAACAATGCAAAAAAGGTCGATCTGA 756
Query 644 TGGGTCATTCTCTTCATCCGTTTCTTGCGTACGGGAGATCATATGTGGACTTTCTTAAGA 703
|||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct 757 TGGGTCATTCTCTTCATCCGTTTCTT--G--C--GAGATCATATGTGGACTTTATTAAGA 810
Query 704 ATTTCTTTGAGGGTGAGTTACAAGCAAATCAAAGTTTATTCTCAAGCGAAGATAAA-TAT 762
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||| |||
Sbjct 811 GTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAAGCAAAGA-AAAGTAT 869
Query 763 GAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACCTCAGAGGAAAGTGG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACCTCAGAGGAAAGTGG 929
Query 823 GAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCGTTTAAGGTGGGAGCAG 882
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 930 GAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTTTAAGGTGGGAACAA 989
Query 883 CTTaaaaaaaCGCTTCAATCGAAGAAAAACAAGGCTCTATCACTGCGGACATGCGTAGAA 942
||||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 990 CTTAAGAAAGCTCTTCAATCGAAGAGAAACAAGGCTCTATCACTGCGGACGTGCGTAGAA 1049
Query 943 GAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTTTCAAAACAAATGAAC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTTTCAAAACAAATGAAC 1109
Query 1003 CATTTGCTTAAAGCACCCTTCTGCGTCCATCCCAAAACAGGTCGTGTATGTGTTCCTATT 1062
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1110 CATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGGTCGTGTCTGTGTTCCTATT 1169
Query 1063 GACCCGAATAACTGCGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGTTAATT 1122
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1170 GACCCGAATAACTGTGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGCTAATA 1229
Query 1123 GAAGAAATCAATTCCGGTGGCCTCAGAATGGATGTGGATGATGATG 1168
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1230 GAAGAAATCAATTCCGGTGGCCTCAGAATGGACGTGGATGATGATG 1275
Score = 163 bits (88), Expect = 3e-39
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 1 ATGACGAGAGAGGAGATTGAAAACAATGGTGAAGATATGATGATTGATGACCCAAAACCC 60
|||||||||||||||| ||||| || ||| || |||||||||||||||||||||||||||
Sbjct 63 ATGACGAGAGAGGAGACTGAAACCAGTGGAGAGGATATGATGATTGATGACCCAAAACCC 122
Query 61 AAAATCGAAAACGATTTCAATGTTCATTACCTCCGGATTTACTACG 106
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 AAAATCGAAAACGATTTCAATGTTCATTACCTCCGAATTTACTACG 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5