BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891473
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41630.1 | Symbols: | F-box/RNI-like superfamily protein | ... 451 6e-126
AT4G00320.1 | Symbols: | F-box/RNI-like superfamily protein | ... 344 1e-93
AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein | ... 252 7e-66
> AT5G41630.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:16650282-16651835 FORWARD LENGTH=1368
Length=1368
Score = 451 bits (244), Expect = 6e-126
Identities = 434/521 (83%), Gaps = 32/521 (6%)
Strand=Plus/Plus
Query 7 TCGAAAAAGAAGGACTTTGGTGGTTGTAGAGATATAATCAGCGATTTACCAGACGCAGTG 66
||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||| ||
Sbjct 4 TCGAAAATGAAGGATTTTGGTGGTGGTAGAGATATAATCAGTGATTTACCAGATGCACTG 63
Query 67 ATTTGTCACATATTATCATTCCTTCCAACTAAAGAAGCTGCTT-CAACTACCGTTCTTGC 125
|| ||||||| ||||||||||||||||||| |||||||| || | ||||| ||||||||
Sbjct 64 ATAGGTCACATTTTATCATTCCTTCCAACTATAGAAGCTG-TTGCCACTACTGTTCTTGC 122
Query 126 CAAAAGATGGAAGCCTTTGC-TTCGGTGTGTACCCAGTCTTGAGTTTGATGACTCTTTGT 184
|||||||||||||||||||| ||| || ||| | ||||||||| ||||||||||||||||
Sbjct 123 CAAAAGATGGAAGCCTTTGCTTTC-GTTTGTGCACAGTCTTGACTTTGATGACTCTTTGT 181
Query 185 GTTTCCATCCTC-CAATGACTTACGAAGA-AAGGAGCACGAATGCTAGAAGTTTTATGCG 242
|||| ||||| | ||| |||| ||||||| || ||| || ||||||| ||||||||||||
Sbjct 182 GTTTACATCC-CGCAAAGACTAACGAAGAGAA-GAGAACAAATGCTACAAGTTTTATGCG 239
Query 243 GTTCGTGGATGGGGTG--G-CTTTGCAAGGGAATGCTAAGA-TCAACAGATTCCACTTTA 298
|||||||||||||||| | ||||||||||||||||| || | |||| ||||| | | |
Sbjct 240 GTTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTC-GAATAAACAAATTCCGCCTAA 298
Query 299 AGGGTGAAGATATCATCGATCAAATG-TGGGTGCTTGAAATG-ATACCAAATGTGTTGAA 356
| ||| || |||| ||| || ||| | |||||||| || || |||| ||||||||||||
Sbjct 299 ATGGTAAACATATTATCAATGAAA-GATGGGTGCTGGAT-TGGATACAAAATGTGTTGAA 356
Query 357 ACGTGGTGTATCAGATCTT-GATCTAGACATCTCTTCGAT-TTGGGATAGTTTTGACTCG 414
||||| |||||||||| || | |||| || ||||||| | || |||| |||||||||||
Sbjct 357 ACGTGATGTATCAGATATTCG-TCTATACGTCTCTTCC-TGTTCGGATGGTTTTGACTCG 414
Query 415 ATGTTTT-ATCATCTGCCTCCAAAGATCTTTGTGAG-CGAGACATTGGTTAGGCTAA-AA 471
| ||||| ||||| |||||||| |||| |||||||| | | ||| | |||| ||||| ||
Sbjct 415 A-GTTTTTATCATTTGCCTCCAGAGATTTTTGTGAGTCAA-ACACTAGTTACGCTAATAA 472
Query 472 TTAAAATTTGTACAAG-G-CGTCAACATTAGTGTGG-AAGA 509
| || |||| | | | | | ||||||||||||||| ||||
Sbjct 473 T-AATGTTTG-A-AGGTGACATCAACATTAGTGTGGGAAGA 510
Score = 241 bits (130), Expect = 1e-62
Identities = 174/195 (89%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 785 AAGGAATGCATCACATATATTCAGATAGATGTGAGGATGAAGACGGGTGCTTATGCAGAC 844
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1133 AAGGAATGCATCACATATATTCAGATAGATGCGAGGACGAAGACGGGTGCTTATGTAGAT 1192
Query 845 ATCCTACTGGGTTTg-ggggggAAGTGGTTGCTCGTACTTGCCTATCGTCAAGTCCGGTC 903
|||||||| |||| ||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 1193 ATCCTACTAATTTTGTGGGGGGA-GTGGTTGCTCGTCCTTGCCTATCATCAAGTCCGGTC 1251
Query 904 AAGGTTCTGAAGATATTGAACTTTGGTGAAATTTGTGATG-ATCATGAGGACGTTGAAGA 962
|||||||| ||||| |||||||||||||||||||| |||| | |||||||||| ||| ||
Sbjct 1252 AAGGTTCTAAAGATTTTGAACTTTGGTGAAATTTGCGATGTA-CATGAGGACGATGAGGA 1310
Query 963 CGATGATGAAGATGA 977
||| || || |||||
Sbjct 1311 CGACGACGACGATGA 1325
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 964 GATGATGAAGATGAGGAATTTGTTTATTGCTTAAGGGAG 1002
||||||||||||||||||||||||||||| |||||||||
Sbjct 1327 GATGATGAAGATGAGGAATTTGTTTATTGTTTAAGGGAG 1365
> AT4G00320.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:139939-141643 FORWARD LENGTH=1524
Length=1524
Score = 344 bits (186), Expect = 1e-93
Identities = 395/491 (80%), Gaps = 33/491 (7%)
Strand=Plus/Plus
Query 1 ATGGGTTCGAAAAAGAAG-GACTTTGGTGGTTGTAGAGATATAATCAGCGATTTACCAGA 59
|||||||||||||||||| | |||| ||||| ||||||| |||||||| |||||||||
Sbjct 1 ATGGGTTCGAAAAAGAAGTG-TTTTGATGGTTCTAGAGATGGAATCAGCGGTTTACCAGA 59
Query 60 CGCAGTGATTTGTCACATATTATCATTCCTTCCAACTAAAGAAGCTGCTTCAACTACCGT 119
|||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 60 CGCAATGATTTGTCACATATTATCATTTCTTCCAACTAAAGTAGCTGCTTCAACTACCGT 119
Query 120 TCTTGCCAAAAGATGGAAGCCTTTGCTTCGGTGTGTAC-CCAGTC-TTGAGTTTGATGAC 177
|||||||||||||||||||||||||||| | | | || ||| | |||| ||||||||
Sbjct 120 TCTTGCCAAAAGATGGAAGCCTTTGCTT-GCTTT-TATGCCAAACCTTGACTTTGATGAA 177
Query 178 TCTTTGTGTTTCCATCCTCCAATGACTTACGAAGAAAGGAGCACGAATGCTAGAA-GTTT 236
|| || ||||| |||||| |||||||| ||||| ||||| | | | || ||| ||||
Sbjct 178 TCCTTCCGTTTCGATCCTCGAATGACTTGTGAAGAGAGGAGAAAGGGTTCT-GAAAGTTT 236
Query 237 TATGCG-GTTCGTGGATGGGGT---GGCTTTGCAAG-GGAA-----TGCTAAGATCAACA 286
||||| || ||||||| | || ||||||||||| |||| ||||| | | ||||
Sbjct 237 TATGCTTGT-CGTGGATAGTGTATTGGCTTTGCAAGCGGAAGCGAATGCTACGTTGAACA 295
Query 287 GATTCCACTTTAAGGGTGAAGATATCATCGATCAAATGTGGGTGCTTGAAATG-ATACC- 344
|||| || ||||| |||||| | | | || |||| | |||||||||| || |||||
Sbjct 296 AATTCTACGTTAAGTGTGAAGGTGT--T-GAGCAAAACTCGGTGCTTGAA-TGGATACCT 351
Query 345 AAATGTGTTGAAACGTGGTGTATCAGATCTTGATCTAGACATCTCTTCGATTT-G-GGAT 402
||| ||||||||||||||||| | |||| |||||||| | ||| ||||| | | | || |
Sbjct 352 AAA-GTGTTGAAACGTGGTGTGTTAGATATTGATCTACAGATCCCTTCG-TCTCGCGGTT 409
Query 403 A-GTTTTGA-CTCGA-TGTTTTATCATCTGCCTCCAAAGATCTTTGTGAGCGAGACATTG 459
| || | ||||| | ||||||| ||| ||| || |||||||||||||| ||||||||
Sbjct 410 TTGGTTCCAACTCGACT-TTTTATCCTCTACCTTCAGAGATCTTTGTGAGCAAGACATTG 468
Query 460 GTTAGGCTAAA 470
||||| |||||
Sbjct 469 GTTAGACTAAA 479
> AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:16754436-16756263 REVERSE LENGTH=1623
Length=1623
Score = 252 bits (136), Expect = 7e-66
Identities = 365/470 (78%), Gaps = 38/470 (8%)
Strand=Plus/Plus
Query 23 TTGGTGGTTGTAGAGATATAATCAGCGATTTACCAGACGCAGTGATTTGTCACATATTAT 82
|||||| || | |||||| |||||||| ||||||||||||| | ||||| ||||| ||||
Sbjct 26 TTGGTGTTTCTGGAGATAGAATCAGCGGTTTACCAGACGCACTCATTTGCCACATCTTAT 85
Query 83 CATTCCTTCCAACTAAAGAAGCTGCTTCAACTACCGTTCTTGCCAAAAGATGGAAGCCTT 142
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 86 CATTCCTTCCAACAAAAGAAGCTGCTTCAACTACTGTTCTTGCCAAAAGATGGAAGCCTT 145
Query 143 TGCTTCGGTGT-GTACCCAGTCTTGAGTTTGATGACTCTTTGTGTTTCCATCCTCCAATG 201
||||| | | | || || | |||| | ||||||||||| | | ||||||||||| | |
Sbjct 146 TGCTT-GCTTTTGTTCCAAATCTTAACTTTGATGACTCCATCTATTTCCATCCTCGA--G 202
Query 202 ACTTACGAAGAAAGGAGCA--CGAAT-GCTA-GAA-GTTTTATGCGGTTCGTGGATGGGG 256
| | ||||||| || | | || | || ||| |||||||| | ||||||||| | |
Sbjct 203 -CG-A-GAAGAAACAAGTATTCTAAAAGTTACGAAAGTTTTATGAGTTTCGTGGATAGTG 259
Query 257 T---GGCTTTGCAAGGGAATGCTAAGA-TC-----AACAGATTCCACTTTAAGGGTGAAG 307
| ||||||||||| ||| | || | || || || || ||| | ||| ||||||
Sbjct 260 TATTGGCTTTGCAAGCGAAAACGAAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAG 319
Query 308 ATATCATCGATCAAATGT-GGGTGCTTGAAATG-ATACC-AAATGTGTTGAAACGTGGTG 364
|| | | |||||| | | |||| |||||| || ||||| ||| || |||||||||||||
Sbjct 320 ATGTTGTTGATCAA-TCTTGGGTTCTTGAA-TGGATACCCAAA-GTCTTGAAACGTGGTG 376
Query 365 TATCAGATCTTGATCTAGACATCTCTTCGATTTGGGATAGT-TT-TGA---CTCGATGTT 419
| | |||| ||||| || ||||| ||||| | | | | | | || ||| ||| | |||
Sbjct 377 TGTTAGATATTGATTTACACATCACTTCG-TCTCGCA-ATTATTGTGAAAACTCAA-GTT 433
Query 420 TT-AT-CATCTGCCTCCAAAGATCTTTGTGAGCGAGACATTGGTTAGGCT 467
|| || | ||||||| | ||||||||||| ||| ||||||||||||||||
Sbjct 434 TTTATTC-TCTGCCTTCTAAGATCTTTGTAAGCAAGACATTGGTTAGGCT 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5