BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891475
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein | ... 968 0.0
AT5G35926.1 | Symbols: | Protein with RNI-like/FBD-like domain... 782 0.0
AT4G00320.1 | Symbols: | F-box/RNI-like superfamily protein | ... 403 2e-111
AT5G41830.1 | Symbols: | RNI-like superfamily protein | chr5:1... 398 7e-110
> AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:16754436-16756263 REVERSE LENGTH=1623
Length=1623
Score = 968 bits (524), Expect = 0.0
Identities = 669/739 (91%), Gaps = 9/739 (1%)
Strand=Plus/Plus
Query 10 AAAACTCCGTTGAAGAGGTTCCACGTCAAGTGTAAAGATGTTGTTGATCAATATTGGGTG 69
|||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 283 AAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAGATGTTGTTGATCAATCTTGGGTT 342
Query 70 CTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATCTACACATCCCT 129
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 343 CTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATTTACACATCACT 402
Query 130 TCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCTTCTAAGATCTTTG-A 188
|||||||| || |||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct 403 TCGTCTCGCAATTATTGTGAAAACTCAAGTTTTTATTCTCTGCCTTCTAAGATCTTTGTA 462
Query 189 GAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTC-AGCATTCATGTTA 247
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 463 -AGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCCAT-ATTGATGTGG 520
Query 248 AACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTCGGATCGATA 307
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 521 AAGGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTAAGATAGAAA 580
Query 308 CCAGTACGTTTAACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAGAACTAGTGCTGGTTA 367
| |||| | |||||||||||||||||| |||||||||||||||||| | ||||||| ||
Sbjct 581 CGAGTATGCTTAACAAGCTTCTTTCTGGCTGTCACGCGCTCGAAGAGTTGGTGCTGGCTA 640
Query 368 ATATGATGTGGGGTGATTCTTTGGAACATGAAGCTTGCCCTGTGACAGTGTCTATCCCAA 427
|| ||||||||| |||||||| ||| |||||||||||| |||| |||||||||||||||
Sbjct 641 ATTTGATGTGGGCTGATTCTTCAGAAGATGAAGCTTGCCATGTGTCAGTGTCTATCCCAA 700
Query 428 CCCTCAAGAGACTAAAGCTTTGCCGTTCTGAAGATTTCTATGAGGCTGAATTTCATGAGT 487
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |
Sbjct 701 CCCTCAAGAGACTAAATTTTTGCCGTTCTGAAGATTTCTATGAGGGTGAGTTTCATTTTT 760
Query 488 ATGAAGACTATGATGAGGAGAACATTAACGCGGGAGTGTCATTGTCGTTTGATAACCCGA 547
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 761 ATGAAGACTATGATGAGGAGAACATTAACGAGGGAGTGTCATTGTCGTTTGATAATCCGA 820
Query 548 ATTTGGTCTACTTTGAATATTCTGATGCTATTGTGGACAGGTTTAAACAAGTGAGATTTG 607
||||||| ||| ||||||||||||||| ||||||||||| || ||||||||| || ||||
Sbjct 821 ATTTGGTTTACCTTGAATATTCTGATGTTATTGTGGACAAGTATAAACAAGTAAGTTTTG 880
Query 608 ACTCGCTTGTCGAAGCTAATCTCAGACTTCGAAAGACAACTGATGATCAG-ACTAAAACT 666
|||||||||||||||||||||| ||||||||||||||| | ||| ||| | | ||||
Sbjct 881 ACTCGCTTGTCGAAGCTAATCTTAGACTTCGAAAGACACCCGAT---CAGGA-TGAAACA 936
Query 667 GACAAGATTAATGTAACAAAGCTTCTCATGGGAATACGCAATGTTAAGATCCTCTACTTG 726
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 937 GACAAGGTTAATGTAACAAAGCTTCTCATGGGAATACACAATGTTAAGATCCTTTACTTG 996
Query 727 TCTAATGACACTCTTGAGG 745
||| |||||||||||||||
Sbjct 997 TCTGATGACACTCTTGAGG 1015
Score = 335 bits (181), Expect = 6e-91
Identities = 205/217 (94%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 858 GGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGATCTTGAACAAGTGAT 917
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1407 GGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGTTCTTAAACAAGTGAT 1466
Query 918 ATTGTACTACAATACACCAAAGGATGAAGATGTGATGAAAGTATTCAAGAAACTTGAGAA 977
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1467 ATTGTACTACAATACACCAAAAGATGAAGATGTGATGAAAGTGTTCAAGAAACTTGAGAA 1526
Query 978 GCTTCCTGGAGTAGCTTCAGCCAATTGCAATGTCCAAATAAAAGCAAAGAACCTCAGCTT 1037
||||||| ||||||| ||||| |||||||||||||||||| | | ||||||||||||||
Sbjct 1527 GCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATATCATCGAAGAACCTCAGCTT 1586
Query 1038 ATCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG 1074
||||||||||||||||||||||||||||||||||||
Sbjct 1587 GTCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG 1623
Score = 137 bits (74), Expect = 2e-31
Identities = 110/126 (87%), Gaps = 7/126 (6%)
Strand=Plus/Plus
Query 738 TCTT-GAGGGACTGCATCACAAATATACAGATAGATGTGGGGACAAGGACGGATGCTTGT 796
|||| ||||| ||||||||||| |||||| | |||||||||||||||||||| |||||||
Sbjct 1148 TCTTCGAGGGGCTGCATCACAAGTATACAAAGAGATGTGGGGACAAGGACGGCTGCTTGT 1207
Query 797 GCAAATATGAGAATCATTGGGGGGCGAAGTTG--GA----TGTCCATACTTGCTTATCAT 850
||||||||||||||||||||||| ||||| | || ||||| ||||||||||||||
Sbjct 1208 GCAAATATGAGAATCATTGGGGGACGAAGAAGAAGAAGAATGTCCGTACTTGCTTATCAT 1267
Query 851 CAAGTC 856
||||||
Sbjct 1268 CAAGTC 1273
> AT5G35926.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:14062676-14065706 FORWARD LENGTH=1216
Length=1216
Score = 782 bits (423), Expect = 0.0
Identities = 569/638 (89%), Gaps = 15/638 (2%)
Strand=Plus/Plus
Query 115 GATCTACACATCCCTTCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCT 174
|||||| |||| ||||||||||||| || ||||||||||||||||||| ||||||| |||
Sbjct 97 GATCTATACATTCCTTCGTCTCGTGATTGTTGTGAAAACTCGAGTTTTAATCCTCTCCCT 156
Query 175 TCTAAGATCTTTGAGAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTC 234
||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 157 TCTAAGATCTTTGAGAGCAAGGCATTGGTTTGGCTCAAGATACAGTTTCAAGATGGTGTC 216
Query 235 AGCATTCATGTTAAACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTAT 294
|||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 217 AGCATTGATGTGAAACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCACCTTGATTA- 275
Query 295 TTTC-GGATCGATACC-AGTACGTTTAACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAG 352
|||| ||| || ||| |||| |||||||||||||||||||| ||| || ||||| ||||
Sbjct 276 TTTCAAGATAGA-ACCGAGTAAGTTTAACAAGCTTCTTTCTGGCTGCCATGCGCTTGAAG 334
Query 353 AACTAGTGCTGGTTAATATGATGTGGGGTGATTCTTTGGAACATGAAGCTTGCCCTGTGA 412
| |||||||| | ||| ||||||||| |||||| | || | || ||| ||||||||| |
Sbjct 335 AGTTAGTGCTGATCAATTTGATGTGGGCTGATTCCTCGGGATATAAAGTTTGCCCTGTCA 394
Query 413 CAGTGTCTATCCCAACCCTCAAGAGACTAAAGCTTTGCCGTTCTGAAGATTTCTATGAGG 472
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 395 CAGTGTCTATCCCAACCCTCAAGAGACTAAAGTTTTGTCGTTCTGAAGATTTCTATGAGG 454
Query 473 CTGAATTTCATGAGTATGAAGACTATGATGAGGAGAACATTAACGCGGGAGTGTCATTGT 532
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 455 GTAAATTTCATGAGTATGAAGACTATGATGAGGAGAACATTAAAAAGGGAGTGTCATTGT 514
Query 533 CGTTTGATAACCCGAATTTGGTCTACTTTGAATATTCTGATGCTATTGTGGACAGGTTTA 592
|||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||| || ||
Sbjct 515 CGTTTGATAATCCGAATTTGGTGTACCTTGAATATTCTGATGTTATTGTGGACAAGTATA 574
Query 593 AACAAGTGAGATTTGACTCGCTTGTCGAAGCTAATCTCAG-ACTTCGAAAGACAACTGAT 651
||||||||||||||||||||||||| ||||||||||| || ||||||||||| | | |
Sbjct 575 AACAAGTGAGATTTGACTCGCTTGTAGAAGCTAATCT-AGGACTTCGAAAGA-ATC--A- 629
Query 652 GATCAGACTAAAACTGACAAGATTAATGTAACAAAGCTTCTCATGGGAATACGCAATGTT 711
| | || || | ||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 630 G----G-CTGAACCAGACAAGATTAATGTAACAAAGCTTCTCATGGGACTACACAATGTT 684
Query 712 AAGATCCTCTACTTGTCTAATGACACTCTTGAGGGACT 749
||||||||||||||||||||||||| |||||||| |||
Sbjct 685 AAGATCCTCTACTTGTCTAATGACATTCTTGAGGTACT 722
Score = 195 bits (105), Expect = 1e-48
Identities = 126/136 (93%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 940 GATGAAGATGTGATGAAAGTATTCAAGAAACTTG-AGAAGCTTCCTGGAGTAGCTTCAGC 998
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 973 GATGAAGATGTGATGAAAGTATTCAAGAAAC-TGCAGAAGCTTCCTCGAGTAGCTTCAGC 1031
Query 999 CAATTGCAATGTCCAAATAAAAGCAAAGAACCTCAGCTTATCATCTACTTCGACTAAACG 1058
||| || | |||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1032 CAAGTGTGAGGTCCAAATAAAATCAAAGAACCTTAGCTTGTCATCTACTTCGACTAAACG 1091
Query 1059 AGGTACTCTTCTTTAG 1074
||||||||||||||||
Sbjct 1092 AGGTACTCTTCTTTAG 1107
> AT4G00320.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:139939-141643 FORWARD LENGTH=1524
Length=1524
Score = 403 bits (218), Expect = 2e-111
Identities = 392/476 (82%), Gaps = 11/476 (2%)
Strand=Plus/Plus
Query 3 GGAAGCTAAAACTCCGTTGAAGAGGTTCCACGTCAAGTGTAAAGATGTTGTTGATCAATA 62
|||||| || || ||||||| | ||| |||| |||||| ||| | |||||| ||| |
Sbjct 273 GGAAGCGAATGCTACGTTGAACAAATTCTACGTTAAGTGTGAAG--G-TGTTGAGCAAAA 329
Query 63 TTGGGTGCTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATCTACA 122
| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 330 CTCGGTGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACA 389
Query 123 CATCCCTTCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCTTCTA-AGA 181
|||||||||||||| |||||| || ||||||| |||||||||||| ||||| | |||
Sbjct 390 GATCCCTTCGTCTCGCGGTTTTGGTTCCAACTCGACTTTTTATCCTCTACCTTC-AGAGA 448
Query 182 TCTTTGAGAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCAGCATTC 241
|||||| |||||||||||||||||| || |||||||||||||||||||||| || | ||
Sbjct 449 TCTTTGTGAGCAAGACATTGGTTAGACTAAAGATACAGTTTCAGGATGGTGCCAACGTTA 508
Query 242 ATGTTAAACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTCGGA 301
|||| || ||| |||||||||||| | ||||||||| ||||||||||||||| || ||
Sbjct 509 ATGTGGAAGGTGATGTTTCTCTTCCGATGCTTAAGACTCTCCATCTTGATTATGTTAAGA 568
Query 302 TCGATACCAGTACGTTTA-ACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAGAACTAGTG 360
| |||||||| | ||| | | ||||||||||||| ||||||| ||||||||||| || ||
Sbjct 569 TGGATACCAGAATGTT-ACAGAAGCTTCTTTCTGGCTGTCACACGCTCGAAGAATTATTG 627
Query 361 CTGGTTAATATGATGTGGGGTGATTCTTTGGAACATGAAGCTTGCCCTGTGACAGTGTCT 420
||| | ||| |||| ||| || |||| |||| |||| ||||| ||||| || |||
Sbjct 628 CTGATGAATTTGATATGGAAAGAATCTTCAGAACCTGAACCTTGCTTTGTGAGTGTTTCT 687
Query 421 ATCCCAACCCTCAAGAGACTAAAGCTTTGC-CGTTCTGAAGATTTCTATGA-GGCT 474
||| ||||||||||| |||||| ||| | |||| |||| |||| ||||| ||||
Sbjct 688 GTCCGAACCCTCAAGATACTAAAATTTT-CTCGTTTTGAAAATTT-TATGAAGGCT 741
> AT5G41830.1 | Symbols: | RNI-like superfamily protein | chr5:16743762-16745334
REVERSE LENGTH=1392
Length=1392
Score = 398 bits (215), Expect = 7e-110
Identities = 393/478 (82%), Gaps = 15/478 (3%)
Strand=Plus/Plus
Query 3 GGAAGCTAAAACTCCGTTGAAGAGGTTCCACGTCAAGTGTAAAGATGTTGTTGATCAATA 62
|||||| || || ||||||| || ||| |||| |||||| ||| | |||||||||| |
Sbjct 120 GGAAGCGAATGCTACGTTGAACAGATTCTACGTTAAGTGTGAAG--G-TGTTGATCAAAA 176
Query 63 TTGGGTGCTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATCTACA 122
| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 177 CTCGGTGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACA 236
Query 123 CATCCCTTCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCTTCTA-AGA 181
||||| || ||||| |||||| || ||||||| |||||||||||||||||| | |||
Sbjct 237 TATCCCGTCATCTCGCGGTTTTGGTTCCAACTCGACTTTTTATCCTCTGCCTTC-AGAGA 295
Query 182 TCTTTGAGAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCAGCATTC 241
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 296 TCTTTGTGAGCAAGACATTGGTTAGGCTGAAGATACAGTTTCAGGATGGTGTCAACGTTA 355
Query 242 ATGTTAAACGTGGTGTTTCTCTTCCCAA-GCTTAAGACCCTCCATCTTGATTATTTTCGG 300
|||| || ||| |||||||||||| || ||||||||| ||||||||||||||| || |
Sbjct 356 ATGTGGAATGTGATGTTTCTCTTCC-AATGCTTAAGACTCTCCATCTTGATTATGTTAAG 414
Query 301 ATCGATACCAGTACGTTTAACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAGAACTAGTG 360
|| ||||| || | |||| | || |||||||||| ||||||| |||| ||||| || ||
Sbjct 415 ATGGATACTAGAATGTTTCAGAAACTTCTTTCTGGCTGTCACATGCTCAAAGAATTATTG 474
Query 361 CTGGTTAATATGATGTGGG-GTGATTCTTTGGAACATGAAGCTTGCC-CTGTGACAGTGT 418
||| | ||| |||| |||| | || |||| |||| |||| ||||| | || || ||||
Sbjct 475 CTGATGAATTTGATATGGGAG-GAGTCTTCAGAACCTGAACCTTGCTAC-GTAACCGTGT 532
Query 419 CTATCCCAACCCTCAAGAGACTAAAGCTTTGC-CGTTCTGAAGATTTCTATGA-GGCT 474
|| ||||||| || |||| |||||| ||| | |||| |||| |||| | ||| ||||
Sbjct 533 CTGTCCCAACTCTGAAGATACTAAAATTTT-CTCGTTTTGAAAATTT-TGTGAAGGCT 588
Score = 228 bits (123), Expect = 1e-58
Identities = 169/192 (88%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 857 CGGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGATCTTGAACAAGTGA 916
|||| || ||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1193 CGGATCACATAAAGCAGGTCAAGCAATTCCTAGAGACAATGCCGGATCTTGAACAAGTGA 1252
Query 917 TATTGTACTACAATACACCAAAGGATGAAGATGTGATGAAAGTATTCAAGAAACTTGAGA 976
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||
Sbjct 1253 CATTGTACTACAATACACCACAGGATGAAGATGTGATGAAAGTGTTCAAGAAACTTAAGA 1312
Query 977 AGCTTCCTGGAGTAGCTTCAGCCAATTGCAATGTCCAAATAAAAGCAAAGAACCTCAGCT 1036
|||||| | |||||||||||||||| || | |||||||||| | | ||||||| ||
Sbjct 1313 AGCTTCGTAGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAATCTCTGATAACCTCAACT 1372
Query 1037 TATCATCTACTT 1048
|||||| |||||
Sbjct 1373 TATCATTTACTT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5