BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891476
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41830.1 | Symbols: | RNI-like superfamily protein | chr5:1... 894 0.0
AT4G00320.1 | Symbols: | F-box/RNI-like superfamily protein | ... 883 0.0
AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein | ... 106 5e-22
AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:2... 82.4 9e-15
AT3G59230.1 | Symbols: | RNI-like superfamily protein | chr3:2... 76.8 4e-13
> AT5G41830.1 | Symbols: | RNI-like superfamily protein | chr5:16743762-16745334
REVERSE LENGTH=1392
Length=1392
Score = 894 bits (484), Expect = 0.0
Identities = 678/770 (88%), Gaps = 19/770 (2%)
Strand=Plus/Plus
Query 3 GAGAAAGGGTTCTGAAAGTTTTATGCTTTTCGTGGATGGTGTATTGGCTTTGCAAGCGGA 62
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 63 GAGAAAGGGTTCTGAAAGTTTTATGCTTTTCGTGGGTAGTGTATTGACTTTGCAAGCGGA 122
Query 63 AGAGAATGCTCCGTTGAACAGATT-TCACGTTAAGTGTCAAGATGTTGATCAAAACTGGG 121
|| ||||||| ||||||||||||| | ||||||||||| ||| |||||||||||||| ||
Sbjct 123 AGCGAATGCTACGTTGAACAGATTCT-ACGTTAAGTGTGAAGGTGTTGATCAAAACTCGG 181
Query 122 TGCTTGAATGGATACCCAAAGTATTGAAACGTGGTGTGTTAGATATTGATCTACACATGC 181
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 182 TGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACATATCC 241
Query 182 CAT-ATTCGCCTCGCCATTTTCGT-CCAAACTCGGTTTTTTATCCTCTGCCTTCAGAGAT 239
| | || | |||| |||| || |||| |||| ||||||||||||||||||||||||
Sbjct 242 CGTCAT-C---TCGCGGTTTTGGTTCCAA-CTCGACTTTTTATCCTCTGCCTTCAGAGAT 296
Query 240 CTTTACGAGCAAGAAATTGGTTAGGCTGAAGATACACTTTGAGGATGCTGTCAA-GATTG 298
|||| |||||||| ||||||||||||||||||||| ||| |||||| |||||| | ||
Sbjct 297 CTTTGTGAGCAAGACATTGGTTAGGCTGAAGATACAGTTTCAGGATGGTGTCAACG-TTA 355
Query 299 ATGTGGAAGGTGATGTTTCTCTTCCGAA-GCTTAAGACTCTCCATCTTGATTATGTTAAG 357
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 356 ATGTGGAATGTGATGTTTCTCTTCC-AATGCTTAAGACTCTCCATCTTGATTATGTTAAG 414
Query 358 CTAGATACCAGAATGTTTCACAAGCTTCTTTCTGGTTGTCACGCGCTCGAAGAATTATTG 417
| ||||| ||||||||||| || ||||||||||| |||||| |||| |||||||||||
Sbjct 415 ATGGATACTAGAATGTTTCAGAAACTTCTTTCTGGCTGTCACATGCTCAAAGAATTATTG 474
Query 418 CTGTTTAATTTGATATGGGAAGAGTCTTCAAAACCTGAACCTTGCTTA-GTGACCGTGTC 476
||| | |||||||||||||| ||||||||| ||||||||||||||| | || ||||||||
Sbjct 475 CTGATGAATTTGATATGGGAGGAGTCTTCAGAACCTGAACCTTGCT-ACGTAACCGTGTC 533
Query 477 TGTCCCAACACTCAAGATACTCAAGTTTTCTCGTTTTGAAAATTTTAGT-AAGGTTACAG 535
||||||||| || |||||||| || ||||||||||||||||||||| || |||| || ||
Sbjct 534 TGTCCCAACTCTGAAGATACTAAAATTTTCTCGTTTTGAAAATTTT-GTGAAGGCTAAAG 592
Query 536 ATTTCAAACCGATCGTCTTATTGTCATTTGATTTTCCGAAGCTGGTCTACCTAGAGTACT 595
|||| ||||||||||| |||| |||||||||| |||| || || ||||||||||||||||
Sbjct 593 ATTTTAAACCGATCGTGTTATGGTCATTTGATATTCCAAATCTAGTCTACCTAGAGTACT 652
Query 596 TGGATACAATTGCGGACATGTATCAACAAGTGAGTTTTGACTCACTTGTCGAAGCTAAAC 655
|||||||||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |
Sbjct 653 TGGATACAATTGCGGACAAGTATCAACATGTGAGGTTTGACTCGCTTGTTGAAGCTCGTC 712
Query 656 TCGGTCTTTGTAAGAACC-CTAAACAGATTAAAGATGACAAGAATAATGTAAGAAAGCTG 714
| ||||||||||||| || |||||||||||||| ||||||| |||||||||| ||||||
Sbjct 713 TTGGTCTTTGTAAGA-CCTCTAAACAGATTAAAAATGACAATAATAATGTAACAAAGCTT 771
Query 715 TTCATGGGTATATGCAATGTCAAAACTCTCCACTTGACTGCAGATGGTCT 764
|||||||| ||||| |||||||| | |||| ||||||||| ||||| |||
Sbjct 772 TTCATGGGAATATGTAATGTCAAGATTCTCTACTTGACTGAAGATGCTCT 821
Score = 265 bits (143), Expect = 8e-70
Identities = 177/194 (91%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 949 GAAAATGTGGCGGATAAGATAATGCAGGTCAAGCAATTCCTAGAGACAATGCCGGAGCTC 1008
||| |||| |||||| | |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1183 GAAGATGTAGCGGATCACATAAAGCAGGTCAAGCAATTCCTAGAGACAATGCCGGATCTT 1242
Query 1009 GAACAAGTGATGTTGTACTACAATACACCAGAGGTTGAAGATGTGATGAAAGTATTCAAG 1068
|||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 1243 GAACAAGTGACATTGTACTACAATACACCACAGGATGAAGATGTGATGAAAGTGTTCAAG 1302
Query 1069 GAACTTCAGAAGCTTCCTAGAGTAGCTTCAGCCAAGTGTGAGATCCAAATAATCTCTGAT 1128
||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1303 AAACTTAAGAAGCTTCGTAGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAATCTCTGAT 1362
Query 1129 AACCTCAACCTATC 1142
||||||||| ||||
Sbjct 1363 AACCTCAACTTATC 1376
Score = 174 bits (94), Expect = 1e-42
Identities = 148/172 (86%), Gaps = 11/172 (6%)
Strand=Plus/Plus
Query 761 GTCTTAG-GGGACTGCATCATAGATATAGGAAAAGATATGAGAGATACTT-CGGGGACGA 818
||||| | ||||||| |||||| ||||||| || | | || |||| ||| |||||||||
Sbjct 958 GTCTTCGAGGGACTGAATCATATATATAGG--AA-A-A-GA-AGAT-CTTGCGGGGACGA 1010
Query 819 GAACGGGCGGTGCATGTTG-AAACGTATGGATAATATGAGGGTGAAGAAGGATATTGATG 877
||| ||| ||||||| || ||| | |||||||||||||||||||||||||||||||||
Sbjct 1011 GAATAGGCCGTGCATG-TGCAAAAATCTGGATAATATGAGGGTGAAGAAGGATATTGATG 1069
Query 878 TTTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTGA 929
|||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1070 CTTGCCTATCATCAAGTTCGGTAAAGGTTATAAAGATATTGAACTTTGGTGA 1121
> AT4G00320.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:139939-141643 FORWARD LENGTH=1524
Length=1524
Score = 883 bits (478), Expect = 0.0
Identities = 681/778 (88%), Gaps = 17/778 (2%)
Strand=Plus/Plus
Query 3 GAGAAAGGGTTCTGAAAGTTTTATGCTTTTCGTGGATGGTGTATTGGCTTTGCAAGCGGA 62
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 216 GAGAAAGGGTTCTGAAAGTTTTATGCTTGTCGTGGATAGTGTATTGGCTTTGCAAGCGGA 275
Query 63 AGAGAATGCTCCGTTGAACAGATTTC-ACGTTAAGTGTCAAGATGTTGATCAAAACTGGG 121
|| ||||||| ||||||||| | ||| ||||||||||| ||| |||||| ||||||| ||
Sbjct 276 AGCGAATGCTACGTTGAACA-AATTCTACGTTAAGTGTGAAGGTGTTGAGCAAAACTCGG 334
Query 122 TGCTTGAATGGATACCCAAAGTATTGAAACGTGGTGTGTTAGATATTGATCTACACATGC 181
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 335 TGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACAGATCC 394
Query 182 CATATTCGCCTCGCCATTTTCGT-CCAAACTCGGTTTTTTATCCTCTGCCTTCAGAGATC 240
| | | || ||||| |||| || |||| |||| |||||||||||| ||||||||||||
Sbjct 395 C-T-T-CGTCTCGCGGTTTTGGTTCCAA-CTCGACTTTTTATCCTCTACCTTCAGAGATC 450
Query 241 TTTACGAGCAAGAAATTGGTTAGGCTGAAGATACACTTTGAGGATGCTGTCAA-GATTGA 299
||| |||||||| ||||||||| || |||||||| ||| |||||| || ||| | || |
Sbjct 451 TTTGTGAGCAAGACATTGGTTAGACTAAAGATACAGTTTCAGGATGGTGCCAACG-TTAA 509
Query 300 TGTGGAAGGTGATGTTTCTCTTCCGAAGCTTAAGACTCTCCATCTTGATTATGTTAAGCT 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 510 TGTGGAAGGTGATGTTTCTCTTCCGATGCTTAAGACTCTCCATCTTGATTATGTTAAGAT 569
Query 360 AGATACCAGAATGTTTCACAAGCTTCTTTCTGGTTGTCACGCGCTCGAAGAATTATTGCT 419
|||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||
Sbjct 570 GGATACCAGAATGTTACAGAAGCTTCTTTCTGGCTGTCACACGCTCGAAGAATTATTGCT 629
Query 420 GTTTAATTTGATATGGGAAGAGTCTTCAAAACCTGAACCTTGCTTAGTGACCGTGTCTGT 479
| | |||||||||||| |||| |||||| |||||||||||||||| |||| || |||||
Sbjct 630 GATGAATTTGATATGGAAAGAATCTTCAGAACCTGAACCTTGCTTTGTGAGTGTTTCTGT 689
Query 480 CCCAACACTCAAGATACTCAAGTTTTCTCGTTTTGAAAATTTTA-GTAAGGTTACAGATT 538
|| ||| ||||||||||| || |||||||||||||||||||||| | |||| || |||||
Sbjct 690 CCGAACCCTCAAGATACTAAAATTTTCTCGTTTTGAAAATTTTATG-AAGGCTAAAGATT 748
Query 539 TCAAACCGATCGTCTTATTGTCATTTGATTTTCCGAAGCTGGTCTACCTAGAGTACTTGG 598
| ||||||||||| ||||||||||||||| |||| || || |||||| ||||||||||||
Sbjct 749 TTAAACCGATCGTGTTATTGTCATTTGATATTCCAAATCTAGTCTACTTAGAGTACTTGG 808
Query 599 ATACAATTGCGGACATGTATCAACAAGTGAGTTTTGACTCACTTGTCGAAGCTAA-ACTC 657
||||||||||||||| |||| |||||||||| |||||||| ||||| |||||| | |
Sbjct 809 ATACAATTGCGGACAAGTATGAACAAGTGAGGTTTGACTCGCTTGTTAAAGCTAGTATT- 867
Query 658 GGTCTTTGTAAGAACC-CTAAACAGATT-AAAGATGACAAGAATAATGTAAGAAAGCTGT 715
||||||||||||| || ||||||||||| ||| ||||||| |||||||||| |||||| |
Sbjct 868 GGTCTTTGTAAGA-CCTCTAAACAGATTGAAA-ATGACAATAATAATGTAACAAAGCTTT 925
Query 716 TCATGGGTATATGCAATGTCAAAACTCTCCACTTGACTGCAGATGGTCTTAGGGGACT 773
||||||| ||||||||||||| | |||| ||||||||| |||| ||||| || |||
Sbjct 926 TCATGGGAATATGCAATGTCACGATTCTCTACTTGACTGAAGATACTCTTAAGGTACT 983
Score = 340 bits (184), Expect = 1e-92
Identities = 331/398 (83%), Gaps = 26/398 (7%)
Strand=Plus/Plus
Query 761 GTCTTAG-GGGACTGCATCATAGATATAGGAAAAGATATGAGAGATAC---TTCGGGGAC 816
||||| | |||| ||||||||| |||||||||| || | ||| | | || ||||
Sbjct 1111 GTCTTCGAGGGAATGCATCATATATATAGGAAAGGA-A-GAG-CTTGCGGGGACGTGGAC 1167
Query 817 GAGAACGGG-CGGTGCATGTTG-AAACGTATGGATAATATGAGGGTGAAGAAGGATATTG 874
||| | ||| | ||||||| || ||| | ||||||||||||||||||||||||||||||
Sbjct 1168 GAGGATGGGAC-GTGCATG-TGCAAAAATCTGGATAATATGAGGGTGAAGAAGGATATTG 1225
Query 875 ATGTTTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTGAA---- 930
||| ||| ||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1226 ATGCTTGTCTATCGTCAAGTCCGGTGAAGGTCATAAAGATATTGAACTTTGGTGAACTTT 1285
Query 931 ----G----AAGA-TACTG-AAT-TTGAAGAAAATGTGGCGGATAAGATAATGCAGGTCA 979
| || | || || |||||||| |||| |||| | |||||| ||||||||
Sbjct 1286 GTGGGTTTTGTGAGTTTTGTGATGTTGAAGAAGATGTAGCGGGTCAGATAAAGCAGGTCA 1345
Query 980 AGCAATTCCTAGAGACAATGCCGGAGCTCGAACAAGTGATGTTGTACTACAATACACCAG 1039
||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||||||
Sbjct 1346 AGCAATTCCTAGAGACAATGCCGGATCTTGAAAAAGTGATATTGTACTACAATACACCAG 1405
Query 1040 AGGTTGAAGATGTGATGAAAGTATTCAAGGAACTTCAGAAGCTTCCTAGAGTAGCTTCAG 1099
||| ||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||
Sbjct 1406 AGGATGAAGATGTGATGAAGGTGTTCAAGAAACTTAAGAAGCTTCCTAGAGTAGCTTCAG 1465
Query 1100 CCAAGTGTGAGATCCAAATAATCTCTGATAACCTCAAC 1137
||||||||||| |||||||||||||||||||| |||||
Sbjct 1466 CCAAGTGTGAGGTCCAAATAATCTCTGATAACATCAAC 1503
> AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8124415-8126514 FORWARD LENGTH=1825
Length=1825
Score = 106 bits (57), Expect = 5e-22
Identities = 203/268 (76%), Gaps = 31/268 (12%)
Strand=Plus/Plus
Query 879 TTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTGAAGAAGATAC 938
|||| || ||||||||||||||||||||||||||||| |||| ||||||||| | | |
Sbjct 1222 TTGCTTAGCATCAAGTCCGGTGAAGGTTATAAAGATACTGAAATTTGGTGAA-A---T-C 1276
Query 939 TGAATTTGAAGAAAATGTGGCGGATAAGATA-ATGCAGGTCAAGCAATTCCTAGAGACAA 997
| | || || | || | | | ||| | | |||| ||||| | ||| | |||||||
Sbjct 1277 AG--T--GATGACA-TG-GA-GAAGCAGAGAGA-GCAGATCAAGTATTTCTTGGAGACAA 1328
Query 998 TGCCGGAGCTCGAACAAG-TGATGTTGTACTACAATACACCAGAG-GTTGAAGATGTGA- 1054
||||| | || || ||| |||| ||||||||||||||| || || ||||||||||| |
Sbjct 1329 TGCCGAATCTTGAG-AAGATGATTTTGTACTACAATACAACA-AGTGTTGAAGATGTAAC 1386
Query 1055 TGAAAGTATTCAAG--GAACTTCAGAAGCT--TC-CTAGAGTAGCTTCAGCCAAGTG--T 1107
|||| || |||||| | ||||||| ||| | ||| | |||||||| | | ||| |
Sbjct 1387 TGAA-GT-TTCAAGCCGG-CTTCAGAGGCTAGTTTCTAAATTAGCTTCATCGACGTGCAT 1443
Query 1108 GAGATCCAAATAATCTCTGATAACCTCA 1135
| ||||| ||||||||||||||||||
Sbjct 1444 T-G-TCCAACTAATCTCTGATAACCTCA 1469
> AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364
REVERSE LENGTH=1515
Length=1515
Score = 82.4 bits (44), Expect = 9e-15
Identities = 194/262 (74%), Gaps = 27/262 (10%)
Strand=Plus/Plus
Query 879 TTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTGAAGAAGATAC 938
|||||||||||||||||||||||||||| | |||||| | || ||||| |||| | | |
Sbjct 1137 TTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAAGTTTGGCGAAGTTGCTTC 1196
Query 939 TGAATTTGAAGAAAATGTGGCGGATAAG-ATAATGCAG---GTCAAGCAATTCCTAGAGA 994
| | |||| | || | ||| ||| | || || |||||| | ||||| ||||
Sbjct 1197 TTACTTTG--G----TGACGAGGAAAAGCAGC-TGGAGTTAGTCAAGTATTTCCTGGAGA 1249
Query 995 CAATGCCGGAGCTCGAACAAGTGATGTTGTACTACAATACACCAG--AGGTTGAAGATGT 1052
|||||||| | || |||||| |||| ||| |||||||||||| | || | |||| |||
Sbjct 1250 CAATGCCGAATCTTGAACAAATGATATTGCACTACAATACACGAATTAG-T-GAAGGTGT 1307
Query 1053 GATGAAAGT-ATTCAAGGAACTT-CAGAAGCTTCCTAGAGTAGCTTCAGCCAAGTGT-GA 1109
|| ||||| | | | | || | | | ||||||||||| ||||| |||||||| |
Sbjct 1308 GA--AAAGTCAA-CTTG-A-CTGGCT-A-G-TTCCTAGAGTATCTTCATCCAAGTGTAGT 1359
Query 1110 GATCCAAATAATCTCTGATAAC 1131
| ||||| |||||| |||||||
Sbjct 1360 G-TCCAACTAATCTGTGATAAC 1380
> AT3G59230.1 | Symbols: | RNI-like superfamily protein | chr3:21896052-21897787
REVERSE LENGTH=1476
Length=1476
Score = 76.8 bits (41), Expect = 4e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 869 ATATTGATGTTTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTG 928
||||| || |||||||||||||||||||||||||||| || |||||||||| ||||| |
Sbjct 1190 ATATTCATACTTGCCTATCATCAAGTCCGGTGAAGGTTCTAGAGATATTGAAGTTTGGGG 1249
Query 929 AA 930
||
Sbjct 1250 AA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5