BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891481
Length=2790
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41790.1 | Symbols: CIP1 | COP1-interactive protein 1 | chr5... 1604 0.0
AT1G64330.1 | Symbols: | myosin heavy chain-related | chr1:238... 207 4e-52
> AT5G41790.1 | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732847
FORWARD LENGTH=5137
Length=5137
Score = 1604 bits (868), Expect = 0.0
Identities = 954/997 (96%), Gaps = 0/997 (0%)
Strand=Plus/Plus
Query 1794 AGCGTCTTCTGAAACAATGGCCTTAACAGAACAGATCAACAATCTGAAGCATGAGCTTGA 1853
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 3765 AGCGTCTTCTGAAATAATGGCCTTAACAGAACTGATCAACAATCTGAAGAATGAGCTTGA 3824
Query 1854 TTCTCTACAGGTGCAGAAGAGCGAAACCGAAGCTGAGCTTGAGAGTGAGAAGCAAGAGAA 1913
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 3825 TTCTCTACAGGTGCAGAAGAGCGAAACCGAAGCAGAGCTTGAGAGAGAGAAGCAAGAGAA 3884
Query 1914 ATCAGAATTGTTGAATCAGATCACCGATGTTCAGAAAGCATTGGTAGAGCAAGAAGCTGC 1973
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3885 ATCAGAATTGTCGAATCAGATCACCGATGTCCAGAAAGCATTGGTAGAGCAAGAAGCTGC 3944
Query 1974 TTACAATACGCTGAAAGAGGAACACAATCAGATCAACGAACTGTTCAAAGAAAGTGAAAC 2033
||||||||||||| ||||||||||||| ||||| |||||||| || ||||||| |||| |
Sbjct 3945 TTACAATACGCTGGAAGAGGAACACAAGCAGATAAACGAACTATTTAAAGAAACTGAAGC 4004
Query 2034 AACACTAAATAAGCTAACAGAGGATTACAAAGAAGCTCAAAGATTGTTGGAAGAGAGAGG 2093
||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 4005 AACACTAAATAAGGTAACTGTGGATTACAAAGAAGCTCAAAGATTGTTGGAGGAGAGGGG 4064
Query 2094 TAAGGAAGTAACATCCAGAGATTCTGCAATCGGGGTTCATGAAGAGACGATGGAGAGTTT 2153
||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 4065 TAAGGAAGTGACATCCAGAGATTCTACAATTGGGGTTCATGAAGAGACGATGGAGAGTTT 4124
Query 2154 ACGTAATGAGCTGGAAATGAAAGGAGACGAGATTGAGACTCTCATGGAGAAGATCAGTAA 2213
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 4125 ACGTAACGAGCTGGAAATGAAAGGAGACGAGATCGAAACTCTCATGGAGAAGATCAGTAA 4184
Query 2214 CATCGAGGTTAAGCTACGTTTGTCGAACCAGAAACTGAGAGTAACCGAACAGGTACTAAC 2273
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4185 CATCGAGGTTAAGCTACGCTTGTCGAACCAGAAACTGAGAGTAACCGAACAGGTACTAAC 4244
Query 2274 GGAGAAAGAAGAAGCTTTCAGAAAAGAAGAGGCTAAGCACTTAGAGGAGCAAGCATTGCT 2333
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4245 AGAGAAAGAAGAAGCTTTCAGGAAAGAAGAGGCTAAGCACTTAGAGGAGCAAGCATTGCT 4304
Query 2334 TGAGAAGAATCTCGCGGTGACACATGAGACATATCGAGGTATGATCAAAGAGATAGCAGA 2393
||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4305 TGAGAAGAATCTCACCATGACACATGAGACTTATCGAGGTATGATCAAAGAGATAGCAGA 4364
Query 2394 TAAAGTGAACATAACAGTAGATGGGTTTCAATCCATGTCGGGAAAACTCACGGAGAAACA 2453
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 4365 TAAAGTGAACATAACAGTAGATGGGTTTCAATCCATGTCAGAAAAACTCACGGAGAAACA 4424
Query 2454 GGGGAGATACGAGAAAACTGTAATGGAGGCATCGAAAATACTGTGGACTGCGACGAATTG 2513
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 4425 GGGGAGATACGAGAAAACTGTAATGGAGGCATCAAAAATACTGTGGACTGCGACGAATTG 4484
Query 2514 GGTGATagagagaaatcacgagaaggagaagatgaagaaagagatagagaagaaagatga 2573
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4485 GGTGATAGAGAGAAATCACGAGAAGGAGAAGATGAATAAAGAGATAGAGAAGAAAGATGA 4544
Query 2574 agaaataaaaaggcttggaggaaaagtaagagaagatgaaaaagagaaggaaacgatgaa 2633
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 4545 AGAAATAAAAAAGCTTGGAGGAAAAGTAAGAGAAGATGAAAAAGAGAAGGAGATGATGAA 4604
Query 2634 agagaCTTTAATGGGACTTGGAGAAGAGAAAAGAGAAGCGATAAGGCAGTTATGTGTTTG 2693
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4605 AGAGACTTTGATGGGACTTGGAGAAGAGAAAAGAGAAGCGATAAGGCAATTATGTGTTTG 4664
Query 2694 GATCGATCACCATAGAAGTCGTTGTGAATATCTTGAGGATGTTTTGTCTAAGACCGTTGT 2753
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 4665 GATCGATCACCATAGAAGTCGTTGTGAATATCTTGAGGAGGTTTTGTCTAAGACCGTTGT 4724
Query 2754 GGCTCGAGGCCAAAGAAGAGTGTCGCAGCGAGCTTAA 2790
||||||||||||||||||||||||||||||| |||||
Sbjct 4725 GGCTCGAGGCCAAAGAAGAGTGTCGCAGCGAACTTAA 4761
Score = 1247 bits (675), Expect = 0.0
Identities = 1058/1239 (85%), Gaps = 42/1239 (3%)
Strand=Plus/Plus
Query 1 ATGAATAGTGCAGAGGAAGAGAATAAATCTCTATCCTTGAAAGTTTCAGAGATTTCAGAT 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 844 ATGAATAGTGCAGAGGAAGAGAACAAATCTCTATCCTTGAAAGTTTCGGAGATTTCAGAT 903
Query 61 GAGATCCAACAGGCACAGAACACCATACAAAAACTAATTTCCGAATTGGGAGAGATGAAA 120
| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 904 GTGATCCAACAGGGACAGACCACCATACAAGAACTAATTTCCGAATTGGGAGAGATGAAG 963
Query 121 GAAAAGTACAAGGAAAAAGAGAGTGAGCATTCTAGTTCGGTGGAGTTACATAAGACCCAT 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 964 GAAAAGTACAAGGAAAAAGAGAGTGAGCATTCTAGTTTGGTGGAGTTACATAAGACCCAT 1023
Query 181 GAGAGAGATTCATCGAGTCATGTGAAAGAACTAGAAG-AGCA-AGTGGAATCATCaaaaa 238
|||||||| ||||| ||||| ||||||||| |||||| | || | | ||||||||| | |
Sbjct 1024 GAGAGAGAATCATCAAGTCAGGTGAAAGAATTAGAAGCA-CACA-TAGAATCATCAGAGA 1081
Query 239 aaTTAGTTGCAGAGTTGAACCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTACTAT 298
| || |||||||| || | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1082 AGTTGGTTGCAGATTTCACCCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTGCTAT 1141
Query 299 CTCAGAAAATAGCAGAACTCTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAAC 358
|||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||
Sbjct 1142 CTCAGAAAATAGCAGAACTCTCTAACGAGATTCAAGAGGCGCAGAACACCATGCAAGAAC 1201
Query 359 TCATATCTGAGTCTGGACAGTTGAAAGAGAGCCACAGTGT-AAAGGAGAGAGATCTTTTC 417
|||| ||||||||||| ||||||||||||||||||||||| |||| || |||| ||||||
Sbjct 1202 TCATGTCTGAGTCTGGGCAGTTGAAAGAGAGCCACAGTGTGAAAG-AGCGAGAACTTTTC 1260
Query 418 AGCTTGAGGGACATCCACGAGACTCATCAAAGAGAATCATCCTCTC-GAGTGAGTGAATT 476
|| |||||||||||||| |||| |||||||||||| |||||| | | ||| ||||||||
Sbjct 1261 AGTTTGAGGGACATCCATGAGATTCATCAAAGAGACTCATCCAC-CAGAGCAAGTGAATT 1319
Query 477 AGAAGCTCAACTGGAATCCTCAGAACAGC-GGATCTCAGAGTTGAGTGTGGGTCTGAAGG 535
||||||||||||||| |||||| |||||| || ||||||| ||||||| | ||||||| |
Sbjct 1320 AGAAGCTCAACTGGAGTCCTCAAAACAGCAGG-TCTCAGATTTGAGTGCGAGTCTGAAAG 1378
Query 536 ATGCAGAGGAAGAAAACAAAGCTATCTCCTCGAAAAATTTGGAAACTATGGACAAGCTTG 595
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||| || |
Sbjct 1379 CTGCAGAGGAAGAAAACAAAGCTATATCCTCGAAAAACGTGGAAACTATGAACAAACTCG 1438
Query 596 AACAAGCGCAGAACACGATACAAGAACTCAGGGATGAATTAGGAGAGTTGAAAGACCGTC 655
||||| |||||||||||||||| ||||||| || |||||| ||| ||||||||||| | |
Sbjct 1439 AACAAACGCAGAACACGATACAGGAACTCATGGCTGAATTGGGAAAGTTGAAAGACAGCC 1498
Query 656 ACAAAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAGGTACACGAGG-TATATCAGAGA 714
||| ||||||||||||||||||||||||||||||||| ||||||||| | | ||||||
Sbjct 1499 ACAGAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAAGTACACGAGACTC-ACCAGAGA 1557
Query 715 GATTCAACAAGCCGA-GTGGAAGAATTAGTTG--CAATGGTGAAATCAGCAGATCAACAG 771
|||||| ||| | | ||| ||||||||| | ||| | || ||||| || | || |
Sbjct 1558 GATTCATCAATTC-ATGTGAAAGAATTAGAAGAGCAA-G-TGGAATCATCAAAGAAATTG 1614
Query 772 GTTGCAGA-TATGAAGCAGAGTCTGGACACTGCAGAGGAAGAGAAAAAACTGTTATCTCA 830
||||| || | |||| || | ||| ||| ||||||||||||||||||| || |||||||
Sbjct 1615 GTTGCGGAGT-TGAACCAAACCCTGAACAATGCAGAGGAAGAGAAAAAAGTGCTATCTCA 1673
Query 831 GAGAATCTTAGAAATCTCTAATGAGATTCAAGAGGCACAAAAAACCATAGAAGAACACAT 890
|| ||| |||| | ||||| |||||| ||||||||||||| |||||| |||||| | |
Sbjct 1674 GAAAATAGCAGAACTTTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAACTCGT 1733
Query 891 GTCTGAGTCTGAACAGTTGAAAGAGAGCCAC-GTTGAGAAAG-AGAGGGAACTTA-CTGG 947
||||||||||| |||||||||||||||||| || | |||| | || || ||| | |
Sbjct 1734 GTCTGAGTCTGGGCAGTTGAAAGAGAGCCACAGT-GT-AAAGGATAGAGATCTTTTCAGC 1791
Query 948 TTTGAGGGACATTCACGAGACTCATCAAAGAGTATCATCCACTCGTTTGAGTGAATTAGA 1007
|| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1792 TT-GAGGGACATCCACGAGACTCATCAAAGAGAATCATCCACTCGCGTGAGTGAATTAGA 1850
Query 1008 AACTCAACTGAAATTATCAGAACAACGGGTCGT-AGATTTGAGTGCG-AGTCTGAATGAA 1065
| |||||||| ||| |||||||| ||| || | |||||||| || | | |||||| ||
Sbjct 1851 AGCTCAACTGGAATCCTCAGAACAGCGGATC-TCAGATTTGACTGTGGA-TCTGAAGGAT 1908
Query 1066 GCAGAGGAAGAAAAGAA-GTCCATGTCCTC-AGAGATTTTGGAAATTACGGATGAGCTCA 1123
|||||||||||||| || | | || ||||| | | |||| |||||||| ||| ||||
Sbjct 1909 GCAGAGGAAGAAAACAAAG-CTATCTCCTCGAAAAATTT-GGAAATTATGGACAAGCTTG 1966
Query 1124 AACAGGC-CAAAAGCAAGGTACAAGAACTTATG-ACTGAATTGGCAGAGTCT-AAAGATA 1180
||||||| || || || | || ||||||| ||| | |||||||| ||||| | |||||
Sbjct 1967 AACAGGCTCAGAA-CACGATAAAAGAACTCATGGA-TGAATTGGGAGAGT-TGAAAGAC- 2022
Query 1181 C-ACACATACAAAAAGAGAGTGAGCTTTCTAGTTTGGTG 1218
| ||||| | | |||||||||||||||||||||||||||
Sbjct 2023 CGACACAAAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTG 2061
Score = 942 bits (510), Expect = 0.0
Identities = 553/574 (96%), Gaps = 1/574 (0%)
Strand=Plus/Plus
Query 1219 GAG-GAATCATCCACTCAGCTAAGAGATTTAGAAGCGCAACTGGAATCATCTGAACACAG 1277
||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2811 GAGAGAATTATCCACTCAGTTAAGAGGTTTAGAAGCGCAACTGGAATCATCTGAACACAG 2870
Query 1278 GGTTTCGGAATTGAGCGAAAGTCTGAAGGCTGCAGAAGAAGAAAGCAAAACTATGTCCAC 1337
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2871 GGTTTTGGAATTGAGCGAAAGTCTGAAGGCTGCAGAAGAAGAAAGCAGAACTATGTCCAC 2930
Query 1338 GAAAATCTCAGAAACTTCAGACGAGCTTGAACGGGCACAGATCATGGTACAGGAACTCAC 1397
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2931 GAAAATCTCAGAAACTTCAGATGAGCTTGAACGGACACAGATCATGGTACAGGAACTCAC 2990
Query 1398 AGCTGATTCGAGCAAACTGAAAGAGCAGCTCGCTGAGAAAGAAGGCGAACTTTTACTTCT 1457
||||||||||||||||||||||||||||||||||||||||||| || |||| || |||||
Sbjct 2991 AGCTGATTCGAGCAAACTGAAAGAGCAGCTCGCTGAGAAAGAAAGCAAACTATTCCTTCT 3050
Query 1458 TACAGAGAAGGACAGCAAATCACAGGTGCAAATAAAAGAACTAGAAGCAACAGTAGCGAC 1517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3051 GACAGAGAAGGACAGCAAATCACAGGTGCAAATAAAAGAACTAGAAGCAACAGTAGCGAC 3110
Query 1518 ACTGGAGCTGGAACTAGAGTCACTTCGTGCCCGTATAACAGATCTTGAGACAGAGATTGC 1577
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 3111 ACTGGAGCTGGAACTAGAGTCAGTTCGTGCCCGTATAATAGATCTTGAGACAGAGATTGC 3170
Query 1578 AAGCAAGACCACCGTAGTTGAGCAATTGGAAGCGCAAAACAGAGAAATGGTTGCTAGAAT 1637
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3171 AAGCAAGACCACCGTAGTTGAGCAGTTGGAAGCGCAAAACAGAGAAATGGTTGCTAGAAT 3230
Query 1638 CTCAGAACTTGAGAAGACAATGGACGAGAGAGGAACTGAACTCTCAGCTTTAACTCAAAA 1697
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3231 CTCAGAACTTGAGAAGACAATGGAGGAGAGAGGAACTGAACTCTCAGCTTTAACTCAAAA 3290
Query 1698 ACTTGAGGATAACGAGAAGCAATCATCGTCCTCAATTGAGAGTTTGACAGCTGAGATCGA 1757
||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 3291 ACTTGAGGATAACGATAAGCAATCATCGTCTTCAATTGAGACTTTGACAGCTGAGATCGA 3350
Query 1758 TGGCCTACGAGCAGAACTAGATTCAATGTCTGTT 1791
|||||||||||||||| |||||||||||||||||
Sbjct 3351 TGGCCTACGAGCAGAATTAGATTCAATGTCTGTT 3384
Score = 854 bits (462), Expect = 0.0
Identities = 567/618 (92%), Gaps = 6/618 (1%)
Strand=Plus/Plus
Query 76 CAGAACACCATACAAAAACTAATTTCCGAATTGGGAGAGATGAAAGAAAAGTACA-AG-G 133
|||||||| ||||| |||| || | ||||||||| || |||||| | || || || |
Sbjct 1447 CAGAACACGATACAGGAACTCATGGCTGAATTGGGAAAGTTGAAAG-ACAG-CCACAGAG 1504
Query 134 AAAAAGAGAGTGAGCATTCTAGTTCGGTGG-AGTTACATAAGACCCATGAGAGAGATTCA 192
| ||||||||||||| |||||||| ||||| || |||| |||| || |||||||||||
Sbjct 1505 AGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAAG-TACACGAGACTCACCAGAGAGATTCA 1563
Query 193 TCGAGTCATGTGAAAGAACTAGAAGAGCAAGTGGAATCATCaaaaaaaTTAGTTGCAGAG 252
|| | ||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1564 TCAATTCATGTGAAAGAATTAGAAGAGCAAGTGGAATCATCAAAGAAATTGGTTGCGGAG 1623
Query 253 TTGAACCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTACTATCTCAGAAAATAGCA 312
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1624 TTGAACCAAACCCTGAACAATGCAGAGGAAGAGAAAAAAGTGCTATCTCAGAAAATAGCA 1683
Query 313 GAACTCTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAACTCATATCTGAGTCT 372
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1684 GAACTTTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAACTCGTGTCTGAGTCT 1743
Query 373 GGACAGTTGAAAGAGAGCCACAGTGTAAAGGAGAGAGATCTTTTCAGCTTGAGGGACATC 432
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1744 GGGCAGTTGAAAGAGAGCCACAGTGTAAAGGATAGAGATCTTTTCAGCTTGAGGGACATC 1803
Query 433 CACGAGACTCATCAAAGAGAATCATCCTCTCGAGTGAGTGAATTAGAAGCTCAACTGGAA 492
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1804 CACGAGACTCATCAAAGAGAATCATCCACTCGCGTGAGTGAATTAGAAGCTCAACTGGAA 1863
Query 493 TCCTCAGAACAGCGGATCTCAGAGTTGAGTGTGGGTCTGAAGGATGCAGAGGAAGAAAAC 552
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 1864 TCCTCAGAACAGCGGATCTCAGATTTGACTGTGGATCTGAAGGATGCAGAGGAAGAAAAC 1923
Query 553 AAAGCTATCTCCTCGAAAAATTTGGAAACTATGGACAAGCTTGAACAAGCGCAGAACACG 612
|||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct 1924 AAAGCTATCTCCTCGAAAAATTTGGAAATTATGGACAAGCTTGAACAGGCTCAGAACACG 1983
Query 613 ATACAAGAACTCAGGGATGAATTAGGAGAGTTGAAAGACCGTCACAAAGAGAAAGAGAGT 672
||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1984 ATAAAAGAACTCATGGATGAATTGGGAGAGTTGAAAGACCGACACAAAGAGAAAGAGAGT 2043
Query 673 GAGCTTTCTAGTTTGGTG 690
||||||||||||||||||
Sbjct 2044 GAGCTTTCTAGTTTGGTG 2061
Score = 737 bits (399), Expect = 0.0
Identities = 450/475 (95%), Gaps = 2/475 (0%)
Strand=Plus/Plus
Query 749 TGGTGAAATCAGCAGATCAACAGGTTGCAGATATGAAGCAGAGTCTGGACACTGCAGAGG 808
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 2057 TGGTGAAGTCAGCAGATCAACAGGTTGCAGATATGAAGCAGAGTCTGGACAATGCAGAAG 2116
Query 809 AAGAGAAAAAACTGTTATCTCAGAGAATCTTAGAAATCTCTAATGAGATTCAAGAGGCAC 868
||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2117 AAGAGAAAAAAATGTTATCTCAGAGAATCTTAGATATCTCTAATGAGATTCAAGAAGCAC 2176
Query 869 AAAAAACCATAGAAGAACACATGTCTGAGTCTGAACAGTTGAAAGAGAGCCACGTTGAGA 928
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2177 AAAAAACCATACAAGAACACATGTCTGAGTCTGAACAGTTGAAAGAGAGCCACGGTGTGA 2236
Query 929 AAGAGAGGGAACTTACTGGTTTGAGGGACATTCACGAGACTCATCAAAGAGTATCATCCA 988
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2237 AAGAGAGGGAACTTACTGGTTTGAGGGACATTCACGAGACTCATCAAAGAGAATCATCCA 2296
Query 989 CTCGTTTGAGTGAATTAGAAACTCAACTGAAATTATCAGAACAACGGGTCGTAGATTTGA 1048
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2297 CTCGTTTGAGTGAATTAGAAACTCAACTGAAATTATTAGAACAACGGGTCGTAGATCTGA 2356
Query 1049 GTGCGAGTCTGAATGAAGCAGAGGAAGAAAAGAAGTCCATGTCCTCAGA-GATTTTGGAA 1107
||||||||||||||| ||||||||||||||||||||| |||||||| | ||| ||||||
Sbjct 2357 GTGCGAGTCTGAATGCTGCAGAGGAAGAAAAGAAGTCCCTGTCCTCA-ATGATCTTGGAA 2415
Query 1108 ATTACGGATGAGCTCAAACAGGCCAAAAGCAAGGTACAAGAACTTATGACTGAATTGGCA 1167
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 2416 ATTACGGATGAGCTCAAACAGGCCCAAAGCAAGGTACAGGAACTTGTGACTGAATTGGCA 2475
Query 1168 GAGTCTAAAGATACACACATACAAAAAGAGAGTGAGCTTTCTAGTTTGGTGGAGG 1222
|||||||||||||||| || ||||||||||| ||||||||||||||| |||||||
Sbjct 2476 GAGTCTAAAGATACACTCACACAAAAAGAGAATGAGCTTTCTAGTTTTGTGGAGG 2530
Score = 366 bits (198), Expect = 5e-100
Identities = 541/703 (77%), Gaps = 38/703 (5%)
Strand=Plus/Plus
Query 537 TGCAGAGGAAGAAAACAAAGCTATCTCCTCGAAAAATTT-GGAAACTAT-GGACAAGCTT 594
|||||||||||| |||||| || | |||| | ||| ||| ||| | | | || | |
Sbjct 852 TGCAGAGGAAGAGAACAAATCTCTATCCTTG-AAAGTTTCGGAGA-TTTCAGATGTGATC 909
Query 595 GAACAAGCG-CAGAACACGATACAAGAACTCAGGGATGAATTAGGAGAGTTGAAAG-ACC 652
||| || | |||| ||| ||||||||||| | ||||| |||||| |||| | |
Sbjct 910 CAAC-AGGGACAGACCACCATACAAGAACTAATTTCCGAATTGGGAGAGATGAAGGAAAA 968
Query 653 GTCACAAAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAGGTACACGAGGTATATCAGA 712
|| |||| || ||||||||||||| |||||||||||||||| |||| || || |||
Sbjct 969 GT-ACAAGGAAAAAGAGAGTGAGCATTCTAGTTTGGTGGAGTTACATAAGACCCATGAGA 1027
Query 713 GAGATTCAACAAG-CCGAGTGGAAGAATTAGTTGCA-ATGGTGA-AATCAGCAGATCAA- 768
|||| ||| |||| | | ||| ||||||||| ||| | | | ||||| |||| ||
Sbjct 1028 GAGAATCATCAAGTCAG-GTGAAAGAATTAGAAGCACA-CAT-AGAATCATCAGA-GAAG 1083
Query 769 CAGGTTGCAGATATGAAGCAGAGTCTGGACACTGCAGAGGAAGAGAAAAAACTGTTATCT 828
|||||||||| | | || || ||| ||| |||||||||||||||||||||| |||||
Sbjct 1084 TTGGTTGCAGATTTCACCCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTGCTATCT 1143
Query 829 CAGAGAATCTTAGAAATCTCTAATGAGATTCAAGAGGCACAAAAAACCATAG-AAGAACA 887
|||| ||| |||| ||||||| |||||||||||||| || || ||||| | ||||||
Sbjct 1144 CAGAAAATAGCAGAACTCTCTAACGAGATTCAAGAGGCGCAGAACACCAT-GCAAGAACT 1202
Query 888 CATGTCTGAGTCTGAACAGTTGAAAGAGAGCCAC-GTTGAGAAAGAGAGGGAAC-TTACT 945
|||||||||||||| |||||||||||||||||| | || ||||||| | |||| || |
Sbjct 1203 CATGTCTGAGTCTGGGCAGTTGAAAGAGAGCCACAG-TGTGAAAGAGCGAGAACTTTTC- 1260
Query 946 GGTTTGAGGGACATTCACGAGACTCATCAAAGAGTA-TCATCCACTC-GTTTGAGTGAAT 1003
||||||||||||| || |||| ||||||||||| | |||||||| | | |||||||
Sbjct 1261 AGTTTGAGGGACATCCATGAGATTCATCAAAGAG-ACTCATCCAC-CAGAGCAAGTGAAT 1318
Query 1004 TAGAAACTCAACTGAAATTATCAGAACAACGGGTCGT-AGATTTGAGTGCGAGTCTGAAT 1062
||||| |||||||| | | ||| |||| | |||| | |||||||||||||||||||||
Sbjct 1319 TAGAAGCTCAACTGGAGTCCTCAAAACAGCAGGTC-TCAGATTTGAGTGCGAGTCTGAAA 1377
Query 1063 GAAGCAGAGGAAGAAAA-GAAGTCCATGTCCTCAG-AGATTTTGGAAATTACGGATGAGC 1120
| |||||||||||||| ||| | || ||||| | | | |||||| || | | | |
Sbjct 1378 GCTGCAGAGGAAGAAAACAAAG-CTATATCCTC-GAAAAACGTGGAAACTATGAACAAAC 1435
Query 1121 TCAAACAGGC-CAAAAGCAAGGTACAAGAACTTATGACTGAATTGGCAGAGTCT-AAAGA 1178
|| |||| | || || || | |||| ||||| ||| ||||||||| | ||| | |||||
Sbjct 1436 TCGAACAAACGCAGAA-CACGATACAGGAACTCATGGCTGAATTGGGAAAGT-TGAAAGA 1493
Query 1179 TA-CACACATACAAAAAGAGAGTGAGCTTTCTAGTTTGGTGGA 1220
| | |||| | | |||||||||||||||||||||||||||||
Sbjct 1494 CAGC-CACAGAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGA 1535
> AT1G64330.1 | Symbols: | myosin heavy chain-related | chr1:23870905-23874198
FORWARD LENGTH=2047
Length=2047
Score = 207 bits (112), Expect = 4e-52
Identities = 190/228 (83%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 1862 AGGTGCAGAAGAGCGAAACCGAAGCTGAGCTTGAGAGTGAGAAGCAAGAGAAATCAGAAT 1921
||| ||| |||| |||||||||||| || || ||||| ||||||||||||||| ||| |
Sbjct 859 AGG-GCAAAAGAACGAAACCGAAGCAGAACTCGAGAGAGAGAAGCAAGAGAAACCAGCGT 917
Query 1922 TGTTGAATCAGATCACCGATGTTCAGAAAGCATTGGTAGAGCAAGAAGCTGCTTACAATA 1981
| |||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 918 TACTGAATCAGATAAACGATGTGCAGAAAGCATTGTTAGAGCAAGAAGCTGCTTACAATA 977
Query 1982 CGCTGAAAGAGGAACACAATCAGATCAACGAACTGTTCAAAGAAAGTGAAACAACACTAA 2041
|||||| | |||||||| |||||||||| ||||| ||||| | ||| ||||| | |
Sbjct 978 CGCTGAGCCAAGAACACAAACAGATCAACGGTTTGTTCGAAGAACGAGAAGCAACAATCA 1037
Query 2042 ATAAGCTAACAGAGGATTACAAAGAAGCTCAA-AGATTGTTGGAAGAG 2088
| ||||||||||| ||||||||| |||| | | |||| |||||| |||
Sbjct 1038 AGAAGCTAACAGATGATTACAAACAAGCCCGAGAGAT-GTTGGAGGAG 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138611263509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5