BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891500
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41630.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1048 0.0
AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein | ... 178 1e-43
> AT5G41630.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:16650282-16651835 FORWARD LENGTH=1368
Length=1368
Score = 1048 bits (567), Expect = 0.0
Identities = 781/883 (88%), Gaps = 19/883 (2%)
Strand=Plus/Plus
Query 6 GTCGAAAAAGAAGGATTTCGGTGGTGGTAGAGATATAATCAGTGAATTACCAGACGAACT 65
|||||||| ||||||||| |||||||||||||||||||||||||| |||||||| | |||
Sbjct 3 GTCGAAAATGAAGGATTTTGGTGGTGGTAGAGATATAATCAGTGATTTACCAGATGCACT 62
Query 66 GATATGTCACATCTTATCATTCCTTCCAACTAAAGAAGCTGCTT-CAACTAGTGTTCTCG 124
|||| ||||||| ||||||||||||||||||| |||||||| || | |||| |||||| |
Sbjct 63 GATAGGTCACATTTTATCATTCCTTCCAACTATAGAAGCTG-TTGCCACTACTGTTCTTG 121
Query 125 CCAAAAGATGGAAGCCTTTGC-TTCGGTATGTACCCAGTCTTGACTTTGGTAACTCTTTG 183
||||||||||||||||||||| ||| || ||| | |||||||||||||| | ||||||||
Sbjct 122 CCAAAAGATGGAAGCCTTTGCTTTC-GTTTGTGCACAGTCTTGACTTTGATGACTCTTTG 180
Query 184 TGTTTCCCTCCTGCAAAGACTTACGAAGAAAAGAGAACGAATGCTAGAAGTTTTATGCGG 243
||||| | ||| ||||||||| ||||||| |||||||| ||||||| |||||||||||||
Sbjct 181 TGTTTACATCCCGCAAAGACTAACGAAGAGAAGAGAACAAATGCTACAAGTTTTATGCGG 240
Query 244 TTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTCGGATTAACAGATTCCACTTTAAG 303
|||||||||||||||||||||||||||||||||||||| || |||| ||||| | | ||
Sbjct 241 TTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTCGAATAAACAAATTCCGCCTAAAT 300
Query 304 GGTGAAGATATTATCGATGAAATG-TGGGTGCTGGATTGGATACAAAATGTGGTGAAACG 362
||| || |||||||| |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 301 GGTAAACATATTATCAATGAAA-GATGGGTGCTGGATTGGATACAAAATGTGTTGAAACG 359
Query 363 TCATGTATCAGATATTCGTCTATACGTCTCTTCCTTTTGGGATGGTTTTGACTCGAGTTT 422
| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 360 TGATGTATCAGATATTCGTCTATACGTCTCTTCCTGTTCGGATGGTTTTGACTCGAGTTT 419
Query 423 TTATCCTCTGCCTCGAGAGATTTTTGTGAGCCAAACACTGGTTACGCTAATAATAAAT-T 481
||||| | |||||| ||||||||||||||| |||||||| |||||||||||||||| | |
Sbjct 420 TTATCATTTGCCTCCAGAGATTTTTGTGAGTCAAACACTAGTTACGCTAATAATAA-TGT 478
Query 482 TTGAAGGTGGCGTCAACATTAGTGTGG-AAGGAGCTGTTTCTCTTCCGAAGCTCAAGACT 540
||||||||| | ||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 479 TTGAAGGTGACATCAACATTAGTGTGGGAAG-AGAAGTTTCTCTTCCGAAGCTCAAGACT 537
Query 541 CTCCATCT-TCATTATTTCAAGATAGAAAT-GAGTACGTTTAACAAGCTTCTTTCTGGTT 598
|||||||| | | ||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 538 CTCCATCTGT-ACCATTTCAAGATA-AAATTGAGTACGTTTAACAAGCTTATTTCTGGTT 595
Query 599 GTCACGCACTCGAAGAATTAATGCTGCTTAATTTGGTG-TGGGATAAGTCTTCGGAACCT 657
||||||||||||||||||| ||| || |||||| || |||||| ||||||||||||||
Sbjct 596 GTCACGCACTCGAAGAATTGATGATGATTAATT-GGAAATGGGATGAGTCTTCGGAACCT 654
Query 658 GAACCTTGCTTTGCGACGTCCCTGTCTATCCCAACCCTCAAGAGACTAGAGTATTGTCGT 717
||||||||||||| ||| | | | | |||||| |||||||| ||||||||||||||||
Sbjct 655 GAACCTTGCTTTGTGAC--CA-TATATCTCCCAAACCTCAAGATACTAGAGTATTGTCGT 711
Query 718 TATGAAAGAGATGATGAGGCTAAAGATAAGGTTTCATTGTCATTTGATAGTCCAAATGTG 777
| ||||||| ||||||||||||| ||||| || ||||| | |||| ||| |||||| |||
Sbjct 712 TTTGAAAGATATGATGAGGCTAACGATAAAGTCTCATTATTATTTCATAATCCAAAGGTG 771
Query 778 GTCTACCTAGAATATTTTGATTGTGTTGCGGATAGGTATCAACAAGTGAGTTTTGATTCG 837
||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||
Sbjct 772 GTCTACCTAGAATTTTTTGATTCAATTGCGGATAGGTATCAACAAGTGAGTTTCGGTTCA 831
Query 838 CTTGTTGAAGCTAGACTAGGCCTTCGAATGACATATGATCAGG 880
||||||||||||||||| || ||||| |||||||||||||||
Sbjct 832 CTTGTTGAAGCTAGACTCGGAATTCGACTGACATATGATCAGG 874
Score = 204 bits (110), Expect = 2e-51
Identities = 133/144 (92%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 880 GGAATCCATCACATATATTCATATAGATGTGAGGACGAAGACGGGTGCTTATGCAGATAT 939
||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 1135 GGAATGCATCACATATATTCAGATAGATGCGAGGACGAAGACGGGTGCTTATGTAGATAT 1194
Query 940 CCTACTGATTTTgggggggggAGTAGTCGCTCGTGCTTGCCTATCATCAAGTCCGGTCAA 999
|||||| |||||| |||||| ||| || |||||| |||||||||||||||||||||||||
Sbjct 1195 CCTACTAATTTTGTGGGGGG-AGTGGTTGCTCGTCCTTGCCTATCATCAAGTCCGGTCAA 1253
Query 1000 GGTTCTAAAGATATTGAACTTTGG 1023
|||||||||||| |||||||||||
Sbjct 1254 GGTTCTAAAGATTTTGAACTTTGG 1277
> AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:16754436-16756263 REVERSE LENGTH=1623
Length=1623
Score = 178 bits (96), Expect = 1e-43
Identities = 163/194 (84%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 1023 GGATCAGATAGAGCATGTCGAA-CACTTCATAGAGA-AGATGCCGAATCTTGAGCAAGTG 1080
||| ||||||||||||||| || |||||| |||||| | |||||| |||| | ||||||
Sbjct 1407 GGAGCAGATAGAGCATGTC-AAGCACTTCCTAGAGACA-ATGCCGGTTCTTAAACAAGTG 1464
Query 1081 ATATTGCACTACTATACATCAAATGATGAAGATTTGATGATGAAAGTGTTCAAGAAACTT 1140
|||||| ||||| ||||| |||| |||||||| || |||||||||||||||||||||||
Sbjct 1465 ATATTGTACTACAATACACCAAAAGATGAAGA--TG-TGATGAAAGTGTTCAAGAAACTT 1521
Query 1141 GAGAACCTTCCAAGAGTAGCTTCAGCCAACTGCAAAATCCAACTAATC-TCGGATAACCT 1199
||||| ||||| ||||||| ||||| || ||||| ||||| || || ||| | |||||
Sbjct 1522 GAGAAGCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATA-TCATCGAAGAACCT 1580
Query 1200 CAGCTTATCATCTA 1213
|||||| |||||||
Sbjct 1581 CAGCTTGTCATCTA 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5