BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891504
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41590.1 | Symbols: | Protein of unknown function (DUF567) ... 1061 0.0
> AT5G41590.1 | Symbols: | Protein of unknown function (DUF567)
| chr5:16632086-16633896 REVERSE LENGTH=801
Length=801
Score = 1061 bits (574), Expect = 0.0
Identities = 639/670 (95%), Gaps = 5/670 (1%)
Strand=Plus/Plus
Query 1 ATGTTCCCTTTCTTGAAGCATCGGTCGAGGTCGGTCCACGGTGAAGATGCACCGTCGTCT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTCCCTTTCTTGAAGCAACGGTCGAGGTCGGTCCACGGTGAAGATGCACCGTCATCT 60
Query 61 ACAGAGTCGTCAGTCACTGTCGCTGCCACAGAT-TCTGGAGGAGCGTGTACGACACTCAC 119
|||||||| ||||| | ||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 61 ACAGAGTCCACAGTCTCCGTCGCTGCCGCAGATAT-TGGAGGAGCGTGTACGACACTCAC 119
Query 120 GGTGTGGAGAAAATCGCTTCTGGTGAGTTGTGAAGGATTCACGGTGATAGATTCGAATGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTGTGGAGAAAATCGCTTCTGGTGAGTTGTGAAGGATTCACGGTGATAGATTCGAATGG 179
Query 180 AGATTTGATTTACCGGGTCGATAACTATGCCCGAACCCGACCCGAAGAACTCATCCTCAT 239
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 180 AGATTTGATTTACCGGGTCGATAATTATGCCCGAACCCGACCCGAGGAACTCATCCTCAT 239
Query 240 GGATAAAGATGGAAACTCCCTCCTCCTCATGCACCGTACCAAGAAAATTACGCTAGTAGA 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGATAAAGATGGAAACTCCCTCCTCCTCATGCATCGTACCAAGAAAATTACGCTAGTAGA 299
Query 300 TAGTTGGGGAATATATGAAGCAAAGGATACAAATGGGGACGCAAAAGTACCAAAGTGCCC 359
|||||||||||| ||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct 300 TAGTTGGGGAATCTATGAAGCAAATGATACAAAAGGAGAAACAAAAATACCAAAGTGCCC 359
Query 360 AATCAGCTGGTACATGAGGAAGAACTTAAAGATGAATATTCTGAGCACCAAATCCGACAT 419
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AA-C--CTGGTACATGAGGAAGAACTTAAAGATGAATATTCTGAGCACCAAATCCGACAT 416
Query 420 TTTGGCATACGTATATTCAGGATCGTTCGATAAGAAGAATTCTTACATCATCAAAGGATC 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 TTTGGCATACGTATATTCAGGATCGTTCGATAAGAAGAATTCATACATCATCAAAGGATC 476
Query 480 GTACAGATGTAAATCGTGTAAAATAGTGCATGTCCCACTGAACCAGACAGTGGTGGAGAT 539
||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 477 GTATAGATGTAAATCGTGTAAAATAGTGCACGTCCCATTGAACAAGACAGTGGTGGAGAT 536
Query 540 CAAAAGGAAAGAGGCCAGAACCAAAGGAGTCCGGTTCGGTTCGGATGTTTTTGATCTGGT 599
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 CAAAAGGAAAGAGGTCAGAACCAAAGGAGTCCGGTTCGGTTCAGATGTTTTTGATCTGGT 596
Query 600 TGTTAATCCTGGTTTTGACACCGGTTTGGCAATGGCTTTGGTTTTGTTATTAGACCAAAT 659
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 TGTTAATCCCGGTTTTGACACCGGTTTGGCAATGGCTTTGGTTTTGTTATTAGATCAAAT 656
Query 660 GTTCTCTTAA 669
||||||||||
Sbjct 657 GTTCTCTTAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5