BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891509

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51800.2 | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase M2...   254    7e-67
  AT3G58100.1 | Symbols: PDCB5 | plasmodesmata callose-binding pr...   209    2e-53


> AT3G51800.2 | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase 
M24 family protein | chr3:19211027-19213709 REVERSE LENGTH=1581
Length=1581

 Score =  254 bits (137),  Expect = 7e-67
 Identities = 261/314 (83%), Gaps = 35/314 (11%)
 Strand=Plus/Plus

Query  198   TTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGG-T-AAG--G---AGG--AT-GA--  245
             |||||||||||||||||||||||||||||||||||| | | |  |    ||   |  |  
Sbjct  1035  TTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGCTCATGTCGTTTTGGTTTTCTACC  1094

Query  246   AGGGGATTTTGTTGCCCAGATTAAGTTCACAGTTTTGCTGATGCCAAATGGATCGGATAG  305
             ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1095  AGGGGATTTTGTTGCTCAGATTAAGTTCACAGTTTTGCTGATGCCAAATGGATCAGATAG  1154

Query  306   GATCACTTCACATACACTTCAGGAGCTTGATACTAAGACCAGT-GAAGACCCTGAGATCA  364
             |||||||||||||||||||||||| |||  ||  ||||||| | ||||||||||||||||
Sbjct  1155  GATCACTTCACATACACTTCAGGAACTTCCTAAAAAGACCA-TCGAAGACCCTGAGATCA  1213

Query  365   TAGGGTGGTTAGCCTTGGGTATCAAGAAGAAGAAAGCC-----AA-GAA-A-G----C--  410
              |||||||||||| ||||| ||||||||||||||||       || ||| | |    |  
Sbjct  1214  AAGGGTGGTTAGCTTTGGGCATCAAGAAGAAGAAAGGTGGTGGAAAGAAGAAGAAAGCCC  1273

Query  411   A---GG----AGAGAAAGGAGAGGCTTCAACAGAGGCTGAGCCAATGGACACAAGTAGTG  463
             |   ||    |||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  1274  AAAAGGCGGGAGAGAAAGGAGAGGCTTCAACAGAGGCTGAGCCAATGGACGCAAGTAGTA  1333

Query  464   ATGCTCAAGAATGA  477
             ||||||||||||||
Sbjct  1334  ATGCTCAAGAATGA  1347


> AT3G58100.1 | Symbols: PDCB5 | plasmodesmata callose-binding 
protein 5 | chr3:21515199-21516487 REVERSE LENGTH=899
Length=899

 Score =  209 bits (113),  Expect = 2e-53
 Identities = 123/128 (96%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTCGTTTGTTTTCAACAATTATTCTGTGAAGAACGGCGAAGAGGACGAGGCTTGC  60
            |||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||
Sbjct  414  ATGGCGTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAAGCTTGC  473

Query  61   AATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCCAGTCAGGGAACTTGCAAATAT  120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  474  AATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCAAGTCAGGGAACTTGCAAATAT  533

Query  121  CCTTCGAG  128
            ||||||||
Sbjct  534  CCTTCGAG  541



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5