BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891512

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41530.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   315    3e-85


> AT5G41530.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: DNA-binding storekeeper protein-related (TAIR:AT5G14280.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants 
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI 
BLink). | chr5:16611660-16612088 FORWARD LENGTH=429
Length=429

 Score =  315 bits (170),  Expect = 3e-85
 Identities = 250/287 (87%), Gaps = 11/287 (4%)
 Strand=Plus/Plus

Query  191  AGCTGGTGAGTTACAAAAATAATCTGGAGATTAATAATGGTGAGAAAGAGAAGAGTGAAG  250
            ||||| ||| ||||   |||||| |||||| | |||||||||| || ||||||||||| |
Sbjct  35   AGCTGTTGAATTAC---AATAATATGGAGACTGATAATGGTGACAAGGAGAAGAGTGAGG  91

Query  251  AAGATGACTTGTGTGTTCTTCAA-GATGCACTTGAGGCGGCGACATCGTTTCAAGGTTTA  309
            ||||||||||||||| || | || |||||||||||||| |  | || |||||||||||||
Sbjct  92   AAGATGACTTGTGTGCTC-TGAAGGATGCACTTGAGGCTGTTATATTGTTTCAAGGTTTA  150

Query  310  AGTCAGTATCAGAAGAATTTGATGTTTCAAAACTTGAAGAATCTTGGAGCTGAAACAATT  369
            ||| | ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct  151  AGTGAATATCAAAAGAAGTTGATGTTTCCAAACTTGAAGAATCTTGGAGCTGAAACAATT  210

Query  370  AAAGAGTTCATCGATGAATGGAAGGCA-TTGAGTGTTGAGGAGCTACATTTGAACATCAA  428
            |||||| |||||||||||||||||| | |||| ||||||||||||| |||||||||||||
Sbjct  211  AAAGAGCTCATCGATGAATGGAAGG-AGTTGAATGTTGAGGAGCTAAATTTGAACATCAA  269

Query  429  GAAAGAAACTCTCTTTGCAAAGTTTGCAAA----AGCTGGAGTTTGA  471
            |||| ||||| ||||| |||||||||||||    |||||||||||||
Sbjct  270  GAAACAAACTTTCTTTACAAAGTTTGCAAACGCTAGCTGGAGTTTGA  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5