BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891525
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-... 464 2e-130
AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 276 1e-73
> AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-17417740
REVERSE LENGTH=3541
Length=3541
Score = 464 bits (251), Expect = 2e-130
Identities = 311/339 (92%), Gaps = 8/339 (2%)
Strand=Plus/Plus
Query 13 CAGGTTGAGGAGATTTACAACTTTTCGCAAGATGACCTCTTAACTGAGGatatatatata 72
|||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||
Sbjct 2263 CAGGTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGG----ATATATA 2318
Query 73 tatataCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTTTGGATCCCAAG 132
| | | |||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 2319 T-T-TCCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAG 2376
Query 133 GAAAAGCAAACTGTATTTGAGATTGGCCGAGAATACATAGATCTTGCTGGATCCTTGGAA 192
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2377 GAAAAGCAAACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAA 2436
Query 193 GGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCTT 251
|||||| | |||||| || ||| |||||||||| |||||||||||||| |||||||||||
Sbjct 2437 GGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTT 2495
Query 252 CACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGAA 311
|||||||||||||| ||||||| |||||||||| |||| ||||||||| |||||||||||
Sbjct 2496 CACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAA 2555
Query 312 AAAGGCAGCGTTGTTATTTGGCACTCACCACGTTGTGGA 350
||||||| |||||||||||||||||||||||||||||||
Sbjct 2556 AAAGGCATCGTTGTTATTTGGCACTCACCACGTTGTGGA 2594
> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100
REVERSE LENGTH=3479
Length=3479
Score = 276 bits (149), Expect = 1e-73
Identities = 281/343 (82%), Gaps = 16/343 (5%)
Strand=Plus/Plus
Query 13 CAGGTTGAGGAGATTTACAACTTTTCGCAAGATGACCTCTTAACTGAGGatatatatata 72
|||||||| |||||| |||||||| |||||||||||||| || |||| | | || |
Sbjct 2100 CAGGTTGAAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGG--A-A-ATGCA 2155
Query 73 tatataCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTTTGGATCCC-AA 131
| | ||||||| || ||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 2156 T-T-TACTAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGA-CCCTAA 2212
Query 132 GGAAAAGCAAACTGTATTTGAGATTGGCCGA-GAATACATAGATCTTGCTGGATC-CTTG 189
|||||| ||||||| ||||||||||||| | || |||||| |||| ||||| || || |
Sbjct 2213 GGAAAAACAAACTGCCTTTGAGATTGGCCAAAGA-TACATAAATCTGGCTGGTTCGCT-G 2270
Query 190 GAAGGCTTGTCTCCTAATGTTCCACTCTACAAAATGAATGAAGGGAAC-GAGCCATGCTT 248
|||||||||||||| || |||||| | |||||||| | ||| ||||| || || |||||
Sbjct 2271 GAAGGCTTGTCTCCAAAAGTTCCATTATACAAAATCACTGA-GGGAAATGAACCGTGCTT 2329
Query 249 CTTCACCACTTACTTTTGTTGGGATCCCACTAAAGCAA-TCGCACAAGGAAACTCATTCC 307
|||||||||||| |||| |||||| | |||||||| | | | ||||| || || | ||
Sbjct 2330 CTTCACCACTTATTTTTCATGGGATTCTACTAAAGCTACT-GTGCAAGGGAATTCCTACC 2388
Query 308 AGAAAAAGGCAGCGTTGTTATTTGGCACTCACCACGTTGTGGA 350
|||| |||||||| || ||| |||| || ||||||||||||||
Sbjct 2389 AGAAGAAGGCAGCATTATTACTTGGTACACACCACGTTGTGGA 2431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18247192887
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5