BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891525 Length=387 Score E Sequences producing significant alignments: (Bits) Value AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-... 464 2e-130 AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 276 1e-73 > AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-17417740 REVERSE LENGTH=3541 Length=3541 Score = 464 bits (251), Expect = 2e-130 Identities = 311/339 (92%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 13 CAGGTTGAGGAGATTTACAACTTTTCGCAAGATGACCTCTTAACTGAGGatatatatata 72 |||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||| Sbjct 2263 CAGGTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGG----ATATATA 2318 Query 73 tatataCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTTTGGATCCCAAG 132 | | | |||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 2319 T-T-TCCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAG 2376 Query 133 GAAAAGCAAACTGTATTTGAGATTGGCCGAGAATACATAGATCTTGCTGGATCCTTGGAA 192 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 2377 GAAAAGCAAACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAA 2436 Query 193 GGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCTT 251 |||||| | |||||| || ||| |||||||||| |||||||||||||| ||||||||||| Sbjct 2437 GGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTT 2495 Query 252 CACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGAA 311 |||||||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||||| Sbjct 2496 CACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAA 2555 Query 312 AAAGGCAGCGTTGTTATTTGGCACTCACCACGTTGTGGA 350 ||||||| ||||||||||||||||||||||||||||||| Sbjct 2556 AAAGGCATCGTTGTTATTTGGCACTCACCACGTTGTGGA 2594 > AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 REVERSE LENGTH=3479 Length=3479 Score = 276 bits (149), Expect = 1e-73 Identities = 281/343 (82%), Gaps = 16/343 (5%) Strand=Plus/Plus Query 13 CAGGTTGAGGAGATTTACAACTTTTCGCAAGATGACCTCTTAACTGAGGatatatatata 72 |||||||| |||||| |||||||| |||||||||||||| || |||| | | || | Sbjct 2100 CAGGTTGAAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGG--A-A-ATGCA 2155 Query 73 tatataCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTTTGGATCCC-AA 131 | | ||||||| || ||||||||||||||||||||||||||||||||| |||| ||| || Sbjct 2156 T-T-TACTAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGA-CCCTAA 2212 Query 132 GGAAAAGCAAACTGTATTTGAGATTGGCCGA-GAATACATAGATCTTGCTGGATC-CTTG 189 |||||| ||||||| ||||||||||||| | || |||||| |||| ||||| || || | Sbjct 2213 GGAAAAACAAACTGCCTTTGAGATTGGCCAAAGA-TACATAAATCTGGCTGGTTCGCT-G 2270 Query 190 GAAGGCTTGTCTCCTAATGTTCCACTCTACAAAATGAATGAAGGGAAC-GAGCCATGCTT 248 |||||||||||||| || |||||| | |||||||| | ||| ||||| || || ||||| Sbjct 2271 GAAGGCTTGTCTCCAAAAGTTCCATTATACAAAATCACTGA-GGGAAATGAACCGTGCTT 2329 Query 249 CTTCACCACTTACTTTTGTTGGGATCCCACTAAAGCAA-TCGCACAAGGAAACTCATTCC 307 |||||||||||| |||| |||||| | |||||||| | | | ||||| || || | || Sbjct 2330 CTTCACCACTTATTTTTCATGGGATTCTACTAAAGCTACT-GTGCAAGGGAATTCCTACC 2388 Query 308 AGAAAAAGGCAGCGTTGTTATTTGGCACTCACCACGTTGTGGA 350 |||| |||||||| || ||| |||| || |||||||||||||| Sbjct 2389 AGAAGAAGGCAGCATTATTACTTGGTACACACCACGTTGTGGA 2431 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18247192887 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5