BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891555
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41090.1 | Symbols: anac095, NAC095 | NAC domain containing ... 555 2e-157
AT3G56520.1 | Symbols: | NAC (No Apical Meristem) domain trans... 230 2e-59
> AT5G41090.1 | Symbols: anac095, NAC095 | NAC domain containing
protein 95 | chr5:16445764-16446537 FORWARD LENGTH=639
Length=639
Score = 555 bits (300), Expect = 2e-157
Identities = 484/567 (85%), Gaps = 35/567 (6%)
Strand=Plus/Plus
Query 1 ATGGGCCCAACATACAGAGATATGCCATTGCCAATAGGTATGAGGTTTCGTCCTTCAGAT 60
||||||||||||||| || | | | |||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGCCCAACATAC--AG--A-G-CTTTGCCAGTAGGTATGAGGTTTCGTCCTTCAGAT 54
Query 61 TTGGAGATGGCTGTTTATTTTTTGATAAATAAAGCTTTAGGACTTACCATAAAAGCTCGT 120
|||||| |||||||||| |||||||| || ||||||||||||||| |||| ||||||| |
Sbjct 55 TTGGAGTTGGCTGTTTACTTTTTGATCAAGAAAGCTTTAGGACTTCCCATGAAAGCTCTT 114
Query 121 ACTATACCTGAAGAGTGTCATGATATCTTCTCAATACATCCTCGAGACTTGCCTGGCTAT 180
||| | || || || ||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 115 ACTGTGCCCGACGAATGTAATGATATCTTCTCAACACATCCTCGCGACTTGCCTGGCTAT 174
Query 181 GGAAGCGAAGAGCATTGGTACTTCTATTGCCAAAAAACC-AAGAATCAAGTTACTACTAC 239
|||||||||||||||||||||||||| ||| || ||||| |||||||||||||||| ||
Sbjct 175 GGAAGCGAAGAGCATTGGTACTTCTACTGC-AAGAAACCCAAGAATCAAGTTACTAGAAC 233
Query 240 CAAATCTTATCATCTCTGGATACCAACAGGAGAAGAAACTGATGTGTTAGATCCAAAAAA 299
||||||||| | |||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 234 GAAATCTTATAACCTCTGGATACCAACGGGAGAAAAAACTGATGTGTTAGATCCAAAGAA 293
Query 300 GAATGACG---AATTAGTCGGTATCAAACGGTCATTTGCTTTCATTGagaacgaagaaga 356
||||| || |||||||||||||||| | || ||| ||||||||||||||||||||||
Sbjct 294 GAATGGCGGCGAATTAGTCGGTATCAAGCATTCGTTTACTTTCATTGAGAACGAAGAAGA 353
Query 357 agaagaacaagaaTCCGATAATAATAACAACGGTTTGTCTGATGAAGAAGAAAAACCTCC 416
||||||| || ||||| || ||| || | |||||||||||| |||||
Sbjct 354 AGAAGAA------TCTGATAACAAGAAC---GG-----C-GATGAAGAAGAA---CCTCC 395
Query 417 ACAATACAATTGGTTCTTGGATGAAATTAGCCTCCCATTGACAGTTCTAGATACTGATTG 476
||||| ||||||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 396 ACAATGCAATTGGTTCTTGGATGAAATCAGCCTCCCATTGACAGTTGTGGATACTGATTG 455
Query 477 GGTTTTGTGTCATATCTTTAACGAGAAGGTTAAACCTGAATGTGTTAATTTGCTGCCTGC 536
| | |||||||||||||| ||||||||||||||||||||| || |||||||| |
Sbjct 456 GACTCTGTGTCATATCTTTTACGAGAAGGTTAAACCTGAATTTGGTAATTTGCA---T-- 510
Query 537 TATAATCGAATCTGAATCCGAATCCGA 563
||| ||||||||||||||||||||||
Sbjct 511 -ATAGTCGAATCTGAATCCGAATCCGA 536
> AT3G56520.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr3:20947107-20947731
REVERSE LENGTH=528
Length=528
Score = 230 bits (124), Expect = 2e-59
Identities = 350/452 (77%), Gaps = 43/452 (10%)
Strand=Plus/Plus
Query 76 TATTTTTTG-ATAAATAAAGCTTTAGGACTTA-CCATAAAAGCTCGTACTATACCTGAAG 133
||||||||| | ||| ||||||||||||| | |||| ||||||||||| ||||||||||
Sbjct 70 TATTTTTTGAAGAAA-AAAGCTTTAGGAC-AACCCATGAAAGCTCGTACGATACCTGAAG 127
Query 134 AGTGTCATGATATCTTCTCAATACATCCTCGA-GA-CTTGCCTGGCTATGGAAGCGAAGA 191
||||||||||||||||||||| |||||| | | || || |||||| ||| ||| |||||
Sbjct 128 AGTGTCATGATATCTTCTCAAGACATCCGC-ATGATCT-GCCTGGTTATCCAAGTGAAGA 185
Query 192 GCATTGGTACT-TCTATTGCCAAAAAACCA-AGAATCAAGTTACTACTACCAAATCTTAT 249
|||||||||| | | |||| | ||||| | || |||||||||| || | ||| ||
Sbjct 186 ACATTGGTACTATTT-TTGC-AGAAAACGTGACAACCAAGTTACTAGTAAC---TCTCAT 240
Query 250 CATCTCTGGATACCAA-CAGGAGAAGAAACTGATGTGTTAGATCCAAAAAAGAATGACGA 308
||||||||| ||||| | ||||||||||| ||||| |||||||||| || ||||| |
Sbjct 241 AATCTCTGGACACCAATC-GGAGAAGAAACCAATGTGCTAGATCCAAAGAATAATGATGC 299
Query 309 ATTAGTCGGTATCAAACGGTCA-TTTGCT-TTCATTGagaacgaagaagaagaagaacaa 366
|||||| ||||| || || || ||| || || |||| | | ||||||||||||||
Sbjct 300 ATTAGTTGGTATTAAGCG-TCGGTTTACTCTT-ATTGCG--C-AAGAAGAAGAAGAA--- 351
Query 367 gaaTCCGATAATAATAACAACGGTTTGTCTGATGAAGAAGAAAAACCTCCACAA-TACAA 425
|| ||||||| | | ||| |||||||| |||||| | | | || || ||
Sbjct 352 ---TCTGATAATATTT-----G-TTTATCTGATGATGAAGAAG--CTTT-A-AAGTATAA 398
Query 426 TTGGTTCTTGGATGAAATTAGCCTCCCATTGACAGTT-CTAGATACTGATTGGGTTTTGT 484
||||||| |||||||||||||||||||| ||||| | | |||||||||||||||| |
Sbjct 399 TTGGTTCATGGATGAAATTAGCCTCCCACAAACAGTAGCGA-ATACTGATTGGGTTTTAT 457
Query 485 GTCATATCTTTAACGAGAAGGTTAAACCTGAA 516
| ||||| ||| | ||||| |||||| |||
Sbjct 458 GCCATATTTTTGGCAAGAAGACTAAACCCGAA 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5